Identifiers and Description
Gene Model Identifier
TTHERM_00641210Standard Name
IXR1 (Intrastrand crosslink recognition protein)Aliases
PreTt10589 | 92.m00131Description
High mobility group (HMG) box protein; HMG box family protein. Homologue of Yeast IXR1 (Nabeel-Shah et al., 2020)Genome Browser (Macronucleus)
Genome Browser (Micronucleus)
External Links
Gene Ontology Annotations
Cellular Component
- nucleus (IEA) | GO:0005634
Molecular Function
- DNA binding (IEA) | GO:0003677
Domains
Gene Expression Profile
Vegetative Cell Cycle (Zhang et al., 2023)
GeneMania
Tetrahymena Stock Center
No Data fetched for Tetrahymena Stock Center
Homologs
Source Identifier Score Tetrahymena borealis EI9_05193.1 5.99779123503299e-175 Description: HMG box family protein (631 aa) SGD YKL032C 0.000005998506718272351 Description: IXR1 Protein that binds DNA containing intrastrand cross-links formed by cisplatin, contains two HMG (high mobility group box) domains, which confer the ability to bend cisplatin-modified DNA; mediates aerobic transcriptional repression of COX5b Oxytricha Contig4658.0.g2 0.000009999254677478949 Description: GCC2 and GCC3 DictyBase DDB_G0282427 1 Description: DDB_G0282427 on chromosome: 3 position 5755702 to 5758268
General Information
No Data fetched for General Information
Associated Literature
- Ref:31932604: Nabeel-Shah S, Ashraf K, Saettone A, Garg J, Derynck J, Lambert JP, Pearlman RE, Fillingham J (2020) Nucleus-specific linker histones Hho1 and Mlh1 form distinct protein interactions during growth, starvation and development in Tetrahymena thermophila. Scientific reports 10(1):168
Sequences
>TTHERM_00641210(coding)
ATGGCATTTAGTTCAAAGACTTCTTACTAAATTTATTACGAAGAGCAGTGTAAAATCTAC
AAGTAAAAAGGTATTACAGGAAATGAAGCTGCTAAGCTTATAGGAAAATAATGGAGCAGC
CTCTCTCCTTAGGAGAAAAAACCATATGATGATAAAAAGAAGGAGTATGAGTAATAAGTA
TTAAGAGAATAAAAAGTCATGAAGGACTTTTAAAAGAAGAGCTAACAAGATAATCAACAA
GCTAACAATAAATCTAATGCTACTTAGAAAAATGTAAATGATGAAAAACAAAACAGCTAA
TAAAAACAAGGAAATATTAAGAAATTTATGAAGGAAGATCTTCAAAAAGAAAAGTAAGAT
ATTCACAAAAAAGTTATTATCAAAAAGGTTGATAGCTCAGGAAAAGTATTATCATCCAAC
TCTTAGTAGCCCTAAACTTAAAGTCAGTAATCAGAAAAGTAAAAACCTTCGAATTAGCAG
CAAAAAAATACTCAAGCTAATAAAGCATCTGAGTAAAAGTAATAGAATAATAATAATAAT
AATCAAAACTCTCAAGAAAAGAAGGTCTAAAAACCAAAAGAGTAATAGCAATACTTTTAG
ATGAACAGTGAATAGGAAAATCTTAGAAAATCTAATCACTAAATTTATATTGATTTCTAC
AAAGAGAGACTTGCTTTTTACTAAAAACGCTTCCCATAGAGAACAGCAAAAGAATTAACT
CAAGTAGTTAAAGAAGAGTGGGACTGCGTTAAACTGCAAAGTAAAATTCAATAAAAAAAT
TAAAAAAAAGAAGTAAAATAAAACAAGGAAGTTTAAACAGTTTAAAAAGAAGGGAAAAAA
ATAGTTGAAATTGATGGTAAACAATTAGAAGTCCCTAAAAAACCTCTTTCAGGATATCTC
AGATACTATTAAGAAGTTTAGCATAAGCTTAAATTAAAAAATCCAGATTAAGCTTAAAAT
GAAATTGCTAAATTAGCTAGTGATTAATGGAAGGCTTTGTCAAAAGAATAATAAGAATAA
TACAATAGTTAATATCGTAAAGAATAATTGGAATATACTAATAAAATAAATGAAATCAAA
TAAAAATATAATATCGTACCTGTTGGAACAAGCTAAAAGAAAACTAAAAAGAACTCTAAA
AACTTTATTATCGTAGATAACTAAAAAGTTTTCTATCCTTTGAGACTTGGAGGCTATTTT
GTATATTAAAGAGTTGCCAGGGAACAATTAAGTAAATAAAATCATAATCGTGACTCGAGA
GAGATTTCTTCAATTATAGGATAAACATGGAAGTAGATGTCTGAGCTAGAAAAATAATAC
TATGAAAATTAAAGTGAAGTTGAATACTAGGAGCAAAAGAAAAACTTTATAGAAAAATAT
GGAGAGTTCCCTGAATAAGAAGTTAAAATAAAGCAAAAACCTAGTTAAAAAATTGAGTAA
AGCCAGTCTAAAAAGATTAATCAAAAAAGAAAAGCTCCTTCTTAAAAAGCAGAACCAGAA
ATTTCCAGTGAAGAAAAGGAAGAATAAATTAAGAAAAAGTATGAAAGAAAAATGAGAATA
AATTATGATGATGTTGAAAGTGAAATTGAAGATATTTACAGTGACATAGAAAAGGATTAA
AAGAAAAAATAAACTAGAGTTTAATACCAAGACGAAACAGATCAAGAAGAAGAAGAAGAT
GAAATTTAAGATCTTAGAAAATAGAATTTAAACAATAGAACATAGTAAAAAACAGGAAAA
GAAGAAAATTTTGATGAAATAGAAAAATAATCTACAAAAAATAAAAAAATTAAAACTGAA
AAAAGAAATTCTTCTGTGCCTAAACCAGGTTCTGCTTCTAAATAAACGAATCGTTTGTTT
GAAATGTTGAAGCAACCTATATAAGCACCAGAAGGTTTTGATTTTTAATTTGAATGA>TTHERM_00641210(gene)
ATGGCATTTAGTTCAAAGACTTCTTACTAAATTTATTACGAAGAGCAGTGTAAAATCTAC
AAGTAAAAAGGTATTACAGGAAATGAAGCTGCTAAGCTTATAGGAAAATAATGGAGCAGC
CTCTCTCCTTAGGAGAAAAAACCATATGATGATAAAAAGAAGGAGTATGAGTAATAAGTA
TTAAGAGAATAAAAAGTCATGAAGGACTTTTAAAAGAAGAGCTAACAAGATAATCAACAA
GCTAACAATAAATCTAATGCTACTTAGAAAAATGTAAATGATGAAAAACAAAACAGCTAA
TAAAAACAAGGAAATATTAAGAAATTTATGAAGGAAGATCTTCAAAAAGAAAAGTAAGAT
ATTCACAAAAAAGTTATTATCAAAAAGGTTGATAGCTCAGGAAAAGTATTATCATCCAAC
TCTTAGTAGCCCTAAACTTAAAGTCAGTAATCAGAAAAGTAAAAACCTTCGAATTAGCAG
CAAAAAAATACTCAAGCTAATAAAGCATCTGAGTAAAAGTAATAGAATAATAATAATAAT
AATCAAAACTCTCAAGAAAAGAAGGTCTAAAAACCAAAAGAGTAATAGCAATACTTTTAG
ATGAACAGTGAATAGGAAAATCTTAGAAAATCTAATCACTAAATTTATATTGATTTCTAC
AAAGAGAGACTTGCTTTTTACTAAAAACGCTTCCCATAGAGAACAGCAAAAGAATTAACT
CAAGTAGTTAAAGAAGAGTGGGACTGCGTTAAACTGCAAAGTAAAATTCAATAAAAAAAT
TAAAAAAAAGAAGTAAAATAAAACAAGGAAGTTTAAACAGTTTAAAAAGAAGGGAAAAAA
ATAGTTGAAATTGATGGTAAACAATTAGAAGTCCCTAAAAAACCTCTTTCAGGATATCTC
AGATACTATTAAGAAGTTTAGCATAAGCTTAAATTAAAAAATCCAGATTAAGCTTAAAAT
GAAATTGCTAAATTAGCTAGTGATTAATGGAAGGCTTTGTCAAAAGAATAATAAGAATAA
TACAATAGTTAATATCGTAAAGAATAATTGGAATATACTAATAAAATAAATGAAATCAAA
TAAAAATATAATATCGTACCTGTTGGAACAAGCTAAAAGAAAACTAAAAAGAACTCTAAA
AACTTTATTATCGTAGATAACTAAAAAGTTTTCTATCCTTTGAGACTTGGAGGCTATTTT
GTATATTAAAGAGTTGCCAGGGAACAATTAAGTAAATAAAATCATAATCGTGACTCGAGA
GAGATTTCTTCAATTATAGGATAAACATGGAAGTAGATGTCTGAGCTAGAAAAATAATAC
TATGAAAATTAAAGTGAAGTTGAATACTAGGAGCAAAAGAAAAACTTTATAGAAAAATAT
GGAGAGTTCCCTGAATAAGAAGTTAAAATAAAGCAAAAACCTAGTTAAAAAATTGAGTAA
AGCCAGTCTAAAAAGATTAATCAAAAAAGAAAAGCTCCTTCTTAAAAAGCAGAACCAGAA
ATTTCCAGTGAAGAAAAGGAAGAATAAATTAAGAAAAAGTATGAAAGAAAAATGAGAATA
AATTATGATGATGTTGAAAGTGAAATTGAAGATATTTACAGTGACATAGAAAAGGATTAA
AAGAAAAAATAAACTAGAGTTTAATACCAAGACGAAACAGATCAAGAAGAAGAAGAAGAT
GAAATTTAAGATCTTAGAAAATAGAATTTAAACAATAGAACATAGTAAAAAACAGGAAAA
GAAGAAAATTTTGATGAAATAGAAAAATAATCTACAAAAAATAAAAAAATTAAAACTGAA
AAAAGAAATTCTTCTGTGCCTAAACCAGGTTCTGCTTCTAAATAAACGAATCGTTTGTTT
GAAATGTTGAAGCAACCTATATAAGCACCAGAAGGTTTTGATTTTTAATTTGAATGA>TTHERM_00641210(protein)
MAFSSKTSYQIYYEEQCKIYKQKGITGNEAAKLIGKQWSSLSPQEKKPYDDKKKEYEQQV
LREQKVMKDFQKKSQQDNQQANNKSNATQKNVNDEKQNSQQKQGNIKKFMKEDLQKEKQD
IHKKVIIKKVDSSGKVLSSNSQQPQTQSQQSEKQKPSNQQQKNTQANKASEQKQQNNNNN
NQNSQEKKVQKPKEQQQYFQMNSEQENLRKSNHQIYIDFYKERLAFYQKRFPQRTAKELT
QVVKEEWDCVKLQSKIQQKNQKKEVKQNKEVQTVQKEGKKIVEIDGKQLEVPKKPLSGYL
RYYQEVQHKLKLKNPDQAQNEIAKLASDQWKALSKEQQEQYNSQYRKEQLEYTNKINEIK
QKYNIVPVGTSQKKTKKNSKNFIIVDNQKVFYPLRLGGYFVYQRVAREQLSKQNHNRDSR
EISSIIGQTWKQMSELEKQYYENQSEVEYQEQKKNFIEKYGEFPEQEVKIKQKPSQKIEQ
SQSKKINQKRKAPSQKAEPEISSEEKEEQIKKKYERKMRINYDDVESEIEDIYSDIEKDQ
KKKQTRVQYQDETDQEEEEDEIQDLRKQNLNNRTQQKTGKEENFDEIEKQSTKNKKIKTE
KRNSSVPKPGSASKQTNRLFEMLKQPIQAPEGFDFQFE