Identifiers and Description

Gene Model Identifier

TTHERM_00101150

Standard Name

RRM56 (RNA recognition motif-containing protein 56)

Aliases

PreTt22914 | 7.m00363

Description

RRM56 CC1 family splicing factor; splicing factor- CC1-like family protein

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF00076 ) RNA recognition motif. (a.k.a. RRM,
  • ( TIGR00087 ) 5'/3'-nucleotidase SurE
  • ( TIGR00449 ) tRNA-guanine transglycosylases, various specificities
  • ( TIGR01622 ) splicing factor, CC1-like family
  • ( TIGR01628 ) polyadenylate binding protein, human types
  • ( TIGR01642 ) U2 snRNP auxilliary factor, large
  • ( TIGR01645 ) poly-U binding splicing factor, half-pint
  • ( TIGR01661 ) ELAV/HuD family splicing factor

Gene Expression Profile

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_00288.1 9.997093137033517e-262
Description: splicing factor, CC1-like family protein (548 aa)
Oxytricha Contig10134.0.g98 8.99739772315193e-58
Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase WBGene00021921 2.0008113830639685e-30
Description: status:Partially_confirmed UniProt:Q8MXS6 protein_id:CCD74061.1
Stentor Coeruleus SteCoe_3588 5.74952226429356e-19
Description: None
DictyBase DDB_G0283687 0.0000000000002999981760818895
Description: DDB_G0283687 on chromosome: 4 position 982205 to 984735
SGD YER165W 0.0000000008996637801615584
Description: PAB1 Poly(A) binding protein, part of the 3-end RNA-processing complex, mediates interactions between the 5 cap structure and the 3 mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences 

>TTHERM_00101150(coding)
ATGGATATAGATCTAGACTAAGCTGAAGCTCTTTTTAACTAATAGGCAAATCAAGGATTA
GAAAACGGTTCCAACGGGGACATTAGAGATGACAAAGATGAAAAAAAGAGCAAAAAGAAG
AAGCATCATAAATCAAAAAGCAGATCAAGATCCAACAAGAAGAAAAGCAAAAAGAAACAT
AGCAGTAGATCCAGATCCAGATCTGGCAAAAAAAGCAAAAAGCATCGTTCCAGATCATCA
AAGAAGGACAAGAAGCACCATCACTCTTCTGAAAGAAAAACTGAAGAAAAATAGAGCTAA
GAGGCTATCTCGAAGTCTTAAGAAACAAGACAGCTAACATCTGTCGAAAGAATCGAGCTA
AAAAAGAGGGAGCTTGAGCAATAAATTGAAAAATTAAACAAGGATGCAGAAGATGCTGCC
AGAGAAGATTTAACTGTTATGATTTATTAGCTACCTTCAAAGGCTGAGGAAAAAGATATT
TGGCGTTACTTAACCAAACATTGTGGTGCTTCTAAAGTTAGAGATATTAAGCTCATTAGA
GATTAAAAGACTAAGAAGTCTAAGGGTGTTGCTTATGCTGAATTTTATATTAAGGAAGAT
GTTGACAAAGCTTTGGCTGCTGACACTAAACCTTTCTTCTTAAAAGGTGAAGAAGTGCCA
ATGTCTGAAGTGAGAATCCAGCATTCATAAGCCGAAAAGAACAGAGCTGCCTTAGCTGCA
AGAGAAATTAAGAGACAAAGAGCAGAAGCCTTAAAAGAGCAATTAGCCAAGTTACAAGAA
GGTCCTGTTAAAGTTTTTGTTGGTGGTTTAAATGGAAAACTAGCTGATATGAACGAATAA
GATTTAAAGGATATATTCTAAAAATACGGTGATATTGAATCTGTTGAATTGCCTGTTAAT
GCTTAAGGAAAATGCCTTGGTTTTGGTTACTTGACTTTCAAAAAGAAAAGTGATGCTCAT
GAAGCTATTAAGATGATGAATGGATTTAAATTATAAGATCAAAAGATTTCTGTTACTCCT
GTAGCAGTTAATTTATCTTTCGCTCCCGTTCAACCTCTTTTCCCTTCAAGTTTAGGAGGA
ACTCAAACTCAAGATAACATTGATTTAGATCAGAATGAAAATAAAGTTTTCTTGCACTCA
GCAGCCAAAAAGCTGGAATTAATGAAGAAATTAGCAGGTAACTCTACTCTTTCTGTGCCT
GGAACTGAAACAGCTGCTTAGCCTACTGTAAACACTCCACTTCCTATTCCTGGTATAGCC
AATTTACCAAGCTTGAATATAGCTCAGAATCCTTAAATTCAAAATAACTTCATGGCTGGA
AATAGACCTCCTACAAGTTTGTTGCCCACCAACTATATAGTATTAGTAAATATGTTTGCA
GAAAGTGATTTCAAAAATGATCCCTCTTTCTTTGCAGATCTTAAAGAAGATGTTAGTGAG
GAATGCAAAAAGTATGGTGATGTTGTTGAAGTATTTGTAGCAATTCGTAGTCCTTGTGGT
TCTGTATTTGTATTGTTTAATGATGCTGTTGGTGCAGTTACTTGTGCAAAGAATATGGAT
GGAAGAATGTTTAATGGAAGACCTATTTCTTCTTATTGTATTTCAGAAGATACTCTACAA
GATGAATTACAAGAACATCTCTGA


>TTHERM_00101150(gene)
ATGGATATAGATCTAGACTAAGCTGAAGCTCTTTTTAACGTAATTAAATTTACCTTTTAA
ATCTCTTAAAAATAACATAGCGCTATAAAATTTACTTTGATAAATAGTTAATATTTCACT
AATTCCCATTTATTTTGTTACCATTTTTAACTTAAATCATCAATTAGGTGGCTATTTACA
CTAAAAACAAACAAAGTATGCCAAAAATAATAAAAATTTTTTAGGTCTTTAATATAAAAC
AATAAAAGCATTTGCTCTTTAAATTTAGGTGCACATAAATAATTAAAAAAAAGATAACTC
ACCTGAAAATTCGTTTAAAAATGCCAATAGCTTCATCTTTTGAGAAAGATAATTTTTGCT
AGACATTTTTTTCAATTTCAGAATCAAAATTAGATTTAAAATTTGAAAAATCAGCGAGGA
AAATGCAATTAATAAATAAAAAAAACTTATTTAATATTCAAACAAATTAATAATTTATAA
TATCTGAAACTTTTATATGTAAAATAAAAGAATAATTTTCTAAATGTCTTAAGGAAAAGC
AATTTTTTGTTTAACCATTTAATTATAATAATTTTTCCCATAAAATTTTTAAAAAAATAT
GTGAATAGCCCTCTAGTTTTAAGAAATAATTTAGAGATATTAAATATTTTGTAATGCGTT
ATTTTGTTTGTGGAAATAATACATAATTTTTCTGAATATCTTCCTTTTTACCATGATTCA
GGCTCTAGAGAAAAATTATCCGAAAATGAGTTGCCATCATTCATTACACTACTTTGCCAC
ACATTCCCACATAATTGTCACTGCCAACAACAACTGACACTACTTAAATCTCACTTTAGT
TTGGAATAAATTAGAAGAACAATAAAAAATAAATAAAATAGGTAGTTAGTTAGTGAGTAA
ATAGAGATTAAAGGAGAAGATTCAAACAAACTAAACTAAATCGTTTTGTTAGTTAGTTGT
GGTGCGGGAAGTTGTTGTTGACCTTCCTTTTTAAATAAATTATAAAAAAATATAATTTAG
GGAAATTTTGAAGTTTTTTGTTTGCCTCAACTTGAAACTTAAGATAATAAATAAAATAAT
TTTAGGGCTAAAAATTTAAAAACAGATTTTTATAGGATTTTGGAGAATTTTTAGATTATT
AGTTAAATGTTGAATAAGCTTCAGCATTTAATTAATGACAGTGACATTAAAATAAAAAAA
TATAATAGAGTTAATTATTATAGCAGCATATTAATAAATAAATAAAGCATTCATATGAAC
AAGAATTTAGAATATAAAAATGATTCTAACTATCTATCTATCTCTTCTCTCTTATAAAAT
AAATAAAAAAGTAATAGGCAAATCAAGGATTAGAAAACGGTTCCAACGGGGACATTAGAG
ATGACAAAGATGAAAAAAAGAGCAAAAAGAAGAAGCATCATAAATCAAAAAGCAGATCAA
GATCCAACAAGAAGAAAAGCAAAAAGAAACATAGCAGTAGATCCAGATCCAGATCTGGCA
AAAAAAGCAAAAAGCATCGTTCCAGATCATCAAAGAAGGACAAGAAGCACCATCACTCTT
CTGAAAGAAAAACTGAAGAAAAATAGAGCTAAGAGGCTATCTCGAAGTCTTAAGAAACAA
GACAGCTAACATCTGTCGAAAGAATCGAGCTAAAAAAGAGGGAGCTTGAGCAATAAATTG
AAAAATTAAGTAAATTTTATTTATTAAATTACTCTAAAAATAATTCAAGCTAATATCAAT
AATCAAAATATCACTAATATATAATTTTTTTTATCATTAGACAAGGATGCAGAAGATGCT
GCCAGAGAAGATTTAACTGTTATGATTTATTAGCTACCTTCAAAGGCTGAGGAAAAAGAT
ATTTGGCGTTACTTAACCAAACATTGTGGTGCTTCTAAAGTTAGAGATATTAAGCTCATT
AGAGATTAAAAGACTAAGAAGTCTAAGGGTGTTGCTTATGCTGAATTTTATATTAAGGAA
GATGTTGACAAAGCTTTGGCTGCTGACACTAAACCTTTCTTCTTAAAAGGTGAAGAAGTG
CCAATGTCTGAAGTGAGAATCCAGCATTCATAAGCCGAAAAGAACAGAGCTGCCTTAGCT
GCAAGGTATTTAATTAAAATACTTTTTATCATTTATTTTTTTAAAATACTAATTCATATC
TTGTTTCTATTCATTGTTGAAATTAAAGTTATATTTTTTTTAAAATCAATAATTGTTAAA
TGAAAAGAGAAATTAAGAGACAAAGAGCAGAAGCCTTAAAAGAGCAATTAGCCAAGTTAC
AAGAAGGTCCTGTTAAAGTTTTTGTTGGTGGTTTAAATGGAAAACTAGCTGATATGAACG
AATAAGATTTAAAGGATATATTCTAAAAATACGGTGATATTGAATCTGTTGAATTGCCTG
TTAATGCTTAAGGAAAATGCCTTGGTTTTGGTTACTTGACTTTCAAAAAGAAAAGTGATG
CTCATGAAGCTATTAAGATGATGAATGGATTTAAATTATAAGATCAAAAGATTTCTGTTA
CTCCTGTAGCAGTTAATTTATCTTTCGCTCCCGTTCAACCTCTTTTCCCTTCAAGTTTAG
GAGGAACTCAAACTCAAGATAACATTGATTTAGATCAGAATGAAAGTAAGCAAATTATTA
GATAAAAAATATAAAAGATTTTTGTGATAAAAAATAAATAGACGCAAAACATACTTTAAA
TTTTATATTTATTTATTTATTTATTTATTTATTAATATATTAGATAAAGTTTTCTTGCAC
TCAGCAGCCAAAAAGCTGGAATTAATGAAGAAATTAGCAGGTAACTCTACTCTTTCTGTG
CCTGGAACTGAAACAGCTGCTTAGCCTACTGTAAACACTCCACTTCCTATTCCTGGTATA
GCCAATTTACCAAGCTTGAATATAGCTCAGAATCCTTAAATTCAAAATAACTTCATGGCT
GGAAATAGACCTCCTACAAGTTTGTTGCCCACCAACTATATAGTATTAGTAAATATGTTT
GCAGAAAGTGATTTCAAAAATGATCCCTCTTTCTTTGCAGATCTTAAAGAAGATGTTAGT
GGTAATTAAATGATTTAATTGATCAAAAAACTTATTCATATTAAATTAGTTAAGTTAATA
CTAAATATTTTATTATAATTATTTATTAGAGGAATGCAAAAAGTATGGTGATGTTGTTGA
AGTATTTGTAGCAATTCGTAGTCCTTGTGGTTCTGTATTTGTATTGTTTAATGATGCTGT
TGGTGCAGTTACTTGTGCAAAGAATATGGATGGAAGAATGTTTAATGGAAGACCTATTTC
TTCTTATTGTATTTCAGAAGATACTCTACAAGATGAATTACAAGAACATCTCTGA


>TTHERM_00101150(protein)
MDIDLDQAEALFNQQANQGLENGSNGDIRDDKDEKKSKKKKHHKSKSRSRSNKKKSKKKH
SSRSRSRSGKKSKKHRSRSSKKDKKHHHSSERKTEEKQSQEAISKSQETRQLTSVERIEL
KKRELEQQIEKLNKDAEDAAREDLTVMIYQLPSKAEEKDIWRYLTKHCGASKVRDIKLIR
DQKTKKSKGVAYAEFYIKEDVDKALAADTKPFFLKGEEVPMSEVRIQHSQAEKNRAALAA
REIKRQRAEALKEQLAKLQEGPVKVFVGGLNGKLADMNEQDLKDIFQKYGDIESVELPVN
AQGKCLGFGYLTFKKKSDAHEAIKMMNGFKLQDQKISVTPVAVNLSFAPVQPLFPSSLGG
TQTQDNIDLDQNENKVFLHSAAKKLELMKKLAGNSTLSVPGTETAAQPTVNTPLPIPGIA
NLPSLNIAQNPQIQNNFMAGNRPPTSLLPTNYIVLVNMFAESDFKNDPSFFADLKEDVSE
ECKKYGDVVEVFVAIRSPCGSVFVLFNDAVGAVTCAKNMDGRMFNGRPISSYCISEDTLQ
DELQEHL