Identifiers and Description

Gene Model Identifier

TTHERM_00408740

Standard Name

RRM16 (RNA Recognition Motif-containing protein 16)

Aliases

PreTt21490 | 44.m00157 | 3714.m00005

Description

RRM16 RNA-binding protein

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF00076 ) RNA recognition motif. (a.k.a. RRM,
  • ( TIGR01622 ) splicing factor, CC1-like family
  • ( TIGR01628 ) polyadenylate binding protein, human types
  • ( TIGR01642 ) U2 snRNP auxilliary factor, large
  • ( TIGR01649 ) hnRNP-L/PTB/hephaestus splicing factor family
  • ( TIGR01659 ) sex-lethal family splicing factor
  • ( TIGR01661 ) ELAV/HuD family splicing factor

Gene Expression Profile

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_10274.1 9.997093137033517e-262
Description: RNA-binding protein (711 aa)
Oxytricha Contig8744.0.g5 3.0009023271667765e-140
Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
DictyBase DDB_G0284663 5.000624069301489e-83
Description: mrd1 on chromosome: 4 position 2315842 to 2318657
SGD YPR112C 9.001321650308988e-69
Description: MRD1 Essential conserved protein that is part of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains
Stentor Coeruleus SteCoe_30797 1.5400882849875202e-51
Description: None
WormBase WBGene00004315 2.000214949834694e-50
Description: locus:rbd-1 status:Partially_confirmed UniProt:Q9XU67 protein_id:CAB05631.1

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences 

>TTHERM_00408740(coding)
ATGTCTAGCAGACTCATAGTTAAAAATATTCCAACTAATGTTGATGAAAAAAAGCTGAAA
GAAATATTTTCTAAATTTGGAAGCGTTACTGATGCCAAGGTTTGTTTAAAAGGACAGAAG
CATAGACGTTTTTGCTTTATCGGATATAAATCTGAAGCAGACGCTACTAAAGCAAAGGAA
TATTTCAATAATACCTACATATAAATGAATAAAATATAAGTTGATTTTGCTAAAACATCA
GATGACCCTAATATTGTAAACTAAAAAAACCTAAAGTTTAAAAAAAGAGAAGGTCAATAA
CAGGATTAAAAACTCTAAAAGAAAGTTAAGAAAAATGAAGAATAGCCAAGCGAAGTACCT
ACTAATAGCTCAGAGCTAACAGCTGAATAAAAGTTTGAAGAGTTTAAAAAGTTGATGAAG
GCAGGATCTAAAGGAACAATGAGTTGGAATGATGTTTTAACAACAATTAAATCAAAACCC
ACAAAGAAAGAACTTAAAAACCAAGCCAAAAATGATAAAAAGAAAGGTAACAATTAAGAT
GATGATGAAGAAGGAGAAAATGTAAACTTTGCTCAAACAGCTTTAGATGATTTAGATAAG
CAATTTGATAAGATTAAGAGCAAAAAAAGCAAAGGAAATAACGAAAATGACAATACAAAT
TAGGATGAGTAAGAAGAAAATTAAGAAGTATCTTAAGATGCCAAATAAAAAAATAGTAGT
AGCAATAATGACCCTATGATTGATGATTGCAGACTTTATGTTTTAAATTTACCTTATGAC
ATCACTGAAGAAGAAGTCAAAGATGTCTTCCGTAAATATGGTAAATTACTTGAAATAAAA
ATGCCAAAAGGAAAAGGAGGTTAGTTTAGAGGTTTTGCATACATCACTTACTCTATGGCA
GGTGAAGCCATGAGAGCTTTTGCTGAGTTAGATAATAAGATTTAATTCGGTAGAATTCTA
CATATTAGACCAGCTTTTAAAGAAAATAAATCAGAAGAATAAAAGAAAATAGAGGAAGAA
AAAGCTCAGAAAGACATTGAATTTGAAAAATCATCTTTTAAAAAATAAAAGAAGTCTGAA
TTAAAGAAATCATTAAATGATGACACTAATTGGAATACTCTTTTCTTAAATCCTAACACA
ATCTTAGAAACAGTCGCCTCAAGATACAACATTAAAAAGAGTGATATATTGTCACCTGAT
GCTGAAAATGCAGCTGTTAGAATTGCTCATGCTGAAACTTAAATTATAGCTGAAACTAAA
GAGTGGATGCTTAAATAAGGTCTAAACTTAGATTTCCTCAATACAGACAGAAAGAACTGT
GAAAGATCAAACAATACTATCCTTGTTAAGAATATTTCTTCTAAAGTAGAACAAGATAGT
TTTAAAGATTTGTTCAGTAGATATGGCTACGTTTCTAAATTCTTGCTTGCACCTAACAAG
GCTATTGGTGTAGTTCAATTTGAAGATTAAAGTCATGCTTTGAATGCTTTTGAAAAGCTC
TCCTATTTCTCTGTTAAAAATAATCCTTTATATCTTGAATGGGCTCCTCTTGGTATGATT
GACGTTGAATAGGCAGAAGAAGAAAAAGAAAAAGAAATTGAAATAGAAGATGAGTTATCT
AAGATTCTTTATATTAAGAACTTAAGTTTTAATACAACTGAATCTACACTATAAAGCTTA
TTTGAAAAAGCTAAAGTTGGCACAATTAGATCAGTCAAAATAGTAAAAAATAAAGGCTAA
TCTTAAGGTTATGGCTTTGTTGAATTCTCTGATCATGAAGCTGTTATTAAATCTATTAAA
AAACTTTAAAATTCTCTATTAGATGGTCATTCAATATAATTAAGTGTTTCCAAAAAAGAA
AAGAACGATCCCAAGAAAAAGGAGCGTAAACAAAAATAAGTTGACATCCCTATTTCAACT
AAATTAGTCATAAGAAATCTTGCTTTTGAATGTACTAAAAAAGAAGTAAGAGATCTCCTT
AAAGTGTATGGAGAAGTAAAATCTGTTCGTTTACCAAAGAAGATGAATGGTTAACATAGA
GGTTTTGCTTTCGCAGAATTTTCAAGTGCAGAAGAAGCAAAGAATGCATTTACAGCTTTG
GAAAATACTCACTTGTATGGTAGAAAGCTTGCCATAGAATGGGCCAAAACAGAATGA


>TTHERM_00408740(gene)
ATGTCTAGCAGACTCATAGTTAAAAATATTCCAACTAATGTTGATGAAAAAAAGCTGAAA
GAAATATTTTCTAAATTTGGAAGCGTTACTGATGCCAAGGTTTGTTTAAAAGGACAGAAG
CATAGACGTTTTTGCTTTATCGGTAAATCTAATATTATAATAGCTTTAAGAAGAGTCTCT
TACTTGTTTTATTATTAAATGTAGGATATAAATCTGAAGCAGACGCTACTAAAGCAAAGG
AATATTTCAATAATACCTACATATAAATGAATAAAATATAAGTTGATTTTGCTAAAACAT
CAGATGACCCTAATATTGTAAACTAAAAAAACCTAAAGGTAATTCAAAAAAACCTATATT
TAATAGCTCTATTTTAAAGCACAATATATAAAATAAAAAGCCTATTAAAGCTTATTTTCA
AAATCATTTTAAAACGCTTATAATTTAAATATTATCTCTGATTGGCTATTAATAATTTAC
ATTTAGTAAAATGCATAAAATTTATTGAAGATAGCTAATTTATTAATTGAATTGAATGCT
TTCTATTGAATAAATTTAAATAAAATTATTTTTTAGTTTAAAAAAAGAGAAGGTCAATAA
CAGGATTAAAAACTCTAAAAGAAAGTTAAGAAAAATGAAGAATAGCCAAGCGAAGTACCT
ACTAATAGCTCAGAGCTAACAGCTGAATAAAAGTTTGAAGAGTTTAAAAAGTTGATGAAG
GCAGGATCTAAAGGAACAATGAGTTGGAATGATGTTTTAACAACAATTAAATCAAAACCC
ACAAAGAAAGAACTTAAAAACCAAGCCAAAAATGATAAAAAGAAAGGTAACAATTAAGAT
GATGATGAAGAAGGAGAAAATGTAAACTTTGCTCAAACAGCTTTAGATGATTTAGATAAG
CAATTTGATAAGATTAAGAGCAAAAAAAGCAAAGGAAATAACGAAAATGACAATACAAAT
TAGGATGAGTAAGAAGAAAATTAAGAAGTATCTTAAGATGCCAAATAAAAAAATAGTAGT
AGCAATAATGACCCTATGATTGATGATTGCAGACTTTATGTTTTAAATTTACCTTATGAC
ATCACTGAAGAAGAAGTCAAAGATGTCTTCCGTAAATATGGTAAATTACTTGAAATAAAA
ATGCCAAAAGGAAAAGGAGGTTAGTTTAGAGGTTTTGCATACATCACTTACTCTATGGCA
GGTGAAGCCATGAGAGCTTTTGCTGAGTTAGATAATAAGATTTAATTCGGTAGAATTCTA
CATATTAGACCAGCTTTTAAAGAAAATAAATCAGAAGAATAAAAGAAAATAGAGGAAGAA
AAAGCTCAGAAAGACATTGAATTTGAAAAATCATCTTTTAAAAAATAAAAGAAGGTAATA
AATTATAAATTTAATAAATAATAAGAATACTTAATATTCCTTATTATATTTTTAATAGTC
TGAATTAAAGAAATCATTAAATGATGACACTAATTGGAATACTCTTTTCTTAAATCCTAA
CACAATCTTAGAAACAGTCGCCTCAAGATACAACATTAAAAAGGTAATTAATTATTTATA
TTAAGTAGGATTTTATTTAATTAAACTAAATATATTTTTATATAAAGAGTGATATATTGT
CACCTGATGCTGAAAATGCAGCTGTTAGAATTGCTCATGCTGAAACTTAAATTATAGCTG
AAACTAAAGAGTGGATGCTTAAATAAGGTCTAAACTTAGATTTCCTCAATACAGACAGAA
AGAACTGTGAAAGATCAAACAATACTATCCTTGTTAAGAATATTTCTTCTAAAGTAGAAC
AAGATAGTTTTAAAGATTTGTTCAGTAGATATGGCTACGTTTCTAAATTCTTGCTTGCAC
CTAACAAGGTAAAAAACATGTTTAAAATAATTAATATTAAAACTTTTGATTAAAATAAAA
GGCTATTGGTGTAGTTCAATTTGAAGATTAAAGTCATGCTTTGAATGCTTTTGAAAAGCT
CTCCTATTTCTCTGTTAAAGTAATAATAATAAAGTTAATATTTATTTGTTTAAATATCTA
TTTAAATATAGAATAATCCTTTATATCTTGAATGGGCTCCTCTTGGTATGATTGACGTTG
AATAGGCAGAAGAAGAAAAAGAAAAAGAAATTGAAATAGAAGATGAGTTATCTAAGATTC
TTTATATTAAGAACTTAAGTTTTAATACAACTGAATCTACACTATAAAGCTTATTTGAAA
AAGCTAAAGTTGGCACAATTAGATCAGTCAAAATAGTAAAAAATAAAGGCTAATCTTAAG
GTTATGGCTTTGTTGAATTCTCTGATCATGAAGCTGTTATTAAATCTATTAAAAAACTTT
AAAATTCTCTATTAGATGGTCATTCAATATAATTAAGTGTTTCCAAAAAAGAAAAGAACG
ATCCCAAGAAAAAGGAGCGTAAACAAAAATAAGTTGACATCCCTATTTCAACTAAATTAG
TCATAAGAAATCTTGCTTTTGAATGTACTAAAAAAGAAGTAAGAGATCTCCTTAAAGTGT
ATGGAGAAGTAAAATCTGTTCGTTTACCAAAGAAGATGAATGGTTAACATAGGTAAATAA
TTAATACTTCATTAAATAACAAAATTAATAATATAAATTTAAAATAATTAGAGGTTTTGC
TTTCGCAGAATTTTCAAGTGCAGAAGAAGCAAAGAATGCATTTACAGCTTTGGAAAATAC
TCACTTGTATGGTAGAAAGCTTGCCATAGAATGGGCCAAAACAGAATGA


>TTHERM_00408740(protein)
MSSRLIVKNIPTNVDEKKLKEIFSKFGSVTDAKVCLKGQKHRRFCFIGYKSEADATKAKE
YFNNTYIQMNKIQVDFAKTSDDPNIVNQKNLKFKKREGQQQDQKLQKKVKKNEEQPSEVP
TNSSELTAEQKFEEFKKLMKAGSKGTMSWNDVLTTIKSKPTKKELKNQAKNDKKKGNNQD
DDEEGENVNFAQTALDDLDKQFDKIKSKKSKGNNENDNTNQDEQEENQEVSQDAKQKNSS
SNNDPMIDDCRLYVLNLPYDITEEEVKDVFRKYGKLLEIKMPKGKGGQFRGFAYITYSMA
GEAMRAFAELDNKIQFGRILHIRPAFKENKSEEQKKIEEEKAQKDIEFEKSSFKKQKKSE
LKKSLNDDTNWNTLFLNPNTILETVASRYNIKKSDILSPDAENAAVRIAHAETQIIAETK
EWMLKQGLNLDFLNTDRKNCERSNNTILVKNISSKVEQDSFKDLFSRYGYVSKFLLAPNK
AIGVVQFEDQSHALNAFEKLSYFSVKNNPLYLEWAPLGMIDVEQAEEEKEKEIEIEDELS
KILYIKNLSFNTTESTLQSLFEKAKVGTIRSVKIVKNKGQSQGYGFVEFSDHEAVIKSIK
KLQNSLLDGHSIQLSVSKKEKNDPKKKERKQKQVDIPISTKLVIRNLAFECTKKEVRDLL
KVYGEVKSVRLPKKMNGQHRGFAFAEFSSAEEAKNAFTALENTHLYGRKLAIEWAKTE