Identifiers and Description

Gene Model Identifier

TTHERM_00471730

Standard Name

NCB2 (nuclear cap-binding protein subunit 2)

Aliases

PreTt22581 | 56.m00285 | 3686.m00128

Description

NCB2 nuclear cap-binding protein subunit 2; nuclear cap binding protein

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_11273.1	3.999369102302453e-125
	Description: nuclear cap binding protein (234 aa)
DictyBase	DDB_G0287197	3.00039543526891e-44
	Description: ncbp2 on chromosome: 4 position 5395993 to 5396806
Oxytricha	Contig9742.0.g62	2.0005131442217614e-40
	Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase	WBGene00009141	1.9998323414791308e-36
	Description: locus:ncbp-2 Nuclear cap-binding protein subunit 2 status:Confirmed UniProt:Q93594 protein_id:CCD31067.1
SGD	YPL178W	1.000137892321693e-31
	Description: CBC2 Small subunit of the heterodimeric cap binding complex that also contains Sto1p, component of the spliceosomal commitment complex; interacts with Npl3p, possibly to package mRNA for export from the nucleus; contains an RNA-binding motif
Stentor Coeruleus	SteCoe_18840	0.000000000000012664165549094176
	Description: None

General Information

No Data fetched for General Information

Associated Literature

1. Ref:26688337: Kataoka K, Mochizuki K (2015) Phosphorylation of an HP1-like Protein Regulates Heterochromatin Body Assembly for DNA Elimination. Developmental cell 35(6):775-88

Sequences

>TTHERM_00471730(coding)
ATGGCATCCTTTTTGTATGATAGTCTTTAACCTTAGAGTTTGTATTATGATAAAAAATCA
GAACTTAGCGAATAGGATTATAAAAAAAGACTTGAAACTACTACAACTGTATATGTAGGA
AATTTACATTTCCAAACAAGAGAGAGCGCACTTTATGAATTATTCTCTCGTGCAGGATAA
ATTAAAGATCTTATAATGGGTATTAATAAAGAAGGTTAATCAGCAGGATTCTGTTTTGTT
GTTTACCACACTCACGAAGAAGCTAGAATAGCAGTTGAATATATTTCATAGACAAAACTA
AATGATAGAGTGATTAGAGTAGATTGGGATTATGGTTTTAAAGAAGGAAGATAGTTTGGA
AGAGGTATGGATGGATATCAAAAAAGAGATTAATACAGATAATAAAATGACTCTGGACGT
CATAATATTCATTAGTAATGGAAGGAGCGTTAACAATAGCAATTTTAAGAAAGGTCTAAT
AGTAGAGGTGGCTTTAGAGGGGGCAACAACTATAATTAAGGATAAAGAGAAGGTTATAAG
GGAAGGTTTAATAATAATTAGGGCAATCATAACTTTGATGAAAATAGTTAAAATAGATAT
AAAAAGAGCTACAACTAATTTAGAAATGAACAAAAAGAAAGAAGTAATTCAAGTTCTCCA
GAATATCCTAAGAAAAAGAGATAATAGTAAGATGATGAAAATGATGATTGA

>TTHERM_00471730(gene)
ATGGCATCCTTTTTGTATGATAGTCTTTAACCTTAGAGTTTGTATTATGATAAAAAATCA
GAACTTAGCGAATAGGATTATAAAAAAAGACTTGAAACTACTACAACTGTATATGTAGGA
AATTTACATTTCCAAACAAGAGAGAGCGCACTTTATGAATTATTCTCTCGTGCAGGATAA
ATTAAAGATCTTATAATGGGTATTAATAAAGAAGGTTAATCAGCAGGATTCTGTTTTGTT
GTGTAATTTAAGTTATTTTTTGAAAAATTTATAATTTTGTTTAAATAAATGTGTAAAAAT
ATATAATAGCTATAAATATATAAATTTCGTTATTTAAAAAAAGTTACCACACTCACGAAG
AAGCTAGAATAGCAGTTGAATATATTTCATAGACAAAGTTGGTTATTAAATTTTATCATT
TAAAAAAATCTAACTAGTTACTAAGAAAAATTTTAATTTATTAAAACTTAGACTAAATGA
TAGAGTGATTAGAGTAGATTGGGATTATGGTTTTAAAGAAGGAAGATAGTTTGGAAGAGG
TATGGATGGATATCAAAAAAGAGATTAATACAGATAATAAAATGACTCTGGACGTCATAA
TATTCATTAGTAATGGAAGGAGCGTTAACAATAGCAATTTTAAGAAAGGTCTAATAGTAG
AGGTGGCTTTAGAGGGGGCAACAACTATAATTAAGGATAAAGAGAAGGTTATAAGGGAAG
GTTTAATAATAATTAGGGCAATCATAACTTTGATGAAAATAGTTAAAATAGATATAAAAA
GAGCTACAACTAATTTAGAAATGAACAAGTATATTTATAAATATTTTAATTGTAAATTAA
TTAATATCATTTTATCATAATACAATAGAAAGAAAGAAGTAATTCAAGTTCTCCAGAATA
TCCTAAGAAAAAGAGATAATAGTAAGATGATGAAAATGATGATTGA

>TTHERM_00471730(protein)
MASFLYDSLQPQSLYYDKKSELSEQDYKKRLETTTTVYVGNLHFQTRESALYELFSRAGQ
IKDLIMGINKEGQSAGFCFVVYHTHEEARIAVEYISQTKLNDRVIRVDWDYGFKEGRQFG
RGMDGYQKRDQYRQQNDSGRHNIHQQWKERQQQQFQERSNSRGGFRGGNNYNQGQREGYK
GRFNNNQGNHNFDENSQNRYKKSYNQFRNEQKERSNSSSPEYPKKKRQQQDDENDD