Identifiers and Description

Gene Model Identifier

TTHERM_00726340

Standard Name

RRP42 (Exosome complex exonuclease RRP42)

Aliases

PreTt21899 | 117.m00151

Description

RRP42 3-prime exoribonuclease family 1 protein

Genome Browser (Macronucleus)



Genome Browser (Micronucleus)

External Links

Gene Ontology Annotations

Molecular Function

Biological Process

Domains

  • ( PF01138 ) 3' exoribonuclease family, domain 1

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_04623.1 4.000089512234839e-180
Description: 3 exoribonuclease family, domain 1 containing protein (271 aa)
WormBase WBGene00000254 4.000089512234839e-180
Description: locus:bli-4 Endoprotease bli-4 status:Confirmed UniProt:P51559 protein_id:CCD70038.1
Oxytricha Contig18372.0.g87 6.001122775063233e-17
Description: 3 exoribonuclease family, domain 1
DictyBase DDB_G0280251 0.0000020007268868677913
Description: DDB_G0280251 on chromosome: 3 position 3165971 to 3166945
Tetrahymena borealis EI9_17854.1 0.0000020007268868677913
Description: hypothetical protein (555 aa)
WormBase WBGene00009289 0.000008000552149328928
Description: locus:exos-7 status:Confirmed UniProt:G5EDS8 protein_id:CAB07377.2
Tetrahymena borealis EI9_12439.1 0.000008000552149328928
Description: hypothetical protein (3247 aa)
SGD YDR280W 0.0002999184360822198
Description: RRP45 Exosome non-catalytic core component; involved in 3-5 RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp45p (PM/SCL-75, EXOSC9)

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00726340(coding)
ATGAACACAAAATCAAGCCCAGGATAAATTGAATTCATTCGCGATGGATTTAAAATAAAC
ATTAGAGGTGATGGTAGAAAGAATGATTAGAGCAGAGAGTATTTAATTTAAACAGGATAG
CTCAAACAAGCAAATGGATCAAGTTTTATTAGCTTAAATGATAACAGTGTAAATATTTAT
ACAGGAATCAAGGTAGAAATAGGTGAAACTGATAACGATGAAGGAAAAATTATCTTAAAG
ATAGAATCTGCTCAAAGAACTGAACAAAATAGAGATTAAGAAAATCATATTAATAGCGAT
AAGAACACTTTGATTTATTTAGAAGCCTTGCTAAATAAGTATCTGATTCAGAATATTTGT
AAAAAATCACTTTGCATAGTTGAAAAGAAAAAATGTTGGATTCTGAATATAGATGTTTTT
ATTTTGGAGTCAGTAGAAATAGCTTATTTAAATTTAATGGCTGCTGGTATTAATGCTGCC
CTTGAAGATTTGGTGTTACCTAAAATATCAATCACTCATAATAATTTAACAAATGAAGAC
GAAATTACTTTAATTGAAGAATAGTTTTAATCCTTTTCAATTTCAAGAGACTTTAAAATG
CCTAAAATCTTGCTTATTGGATAAATTGATAGGATTCTAGTTGGAGATCTTACTGTAGAT
GAATACTATTCAGTAGAAAATAAGTATATTGTTGTTGTTGATGTTTATGAAAACAAAATT
ATTTCAATTAAAAAAACTGGATCTGGTTTCTTACCTCCTGAAGATTATGCCAAAATAGTA
TAATTTGCTCTTTCTTCTGCCTTGAAAAAGTGA


>TTHERM_00726340(gene)
ATGAACACAAAATCAAGCCCAGGATAAATTGAATTCATTCGCGATGGATTTAAAATAAAC
ATTAGAGGTGATGGTAGAAAGAATGATTAGAGCAGAGAGTATTTAATTTAAACAGGATAG
CTCAAACAAGCAAATGGATCAAGTTTTATTAGCTTAAATGATAACAGTGTAAATATTTAT
ACAGGAATCAAGGTAGAAATAGGTGAAACTGATAACGATGAAGGAAAAATTATCTTAAAG
ATAGAATCTGCTCAAAGAACTGAACAAAATAGAGATTAAGAAAATCATATTAATAGCGAT
AAGAACACTTTGATTTATTTAGAAGCCTTGCTAAATAAGTATCTGATTCAGAATATTTGT
AAAAAATCACTTTGCATAGTTGAAAAGAAAAAATGTTGGATTCTGAATATAGATGTTTTT
ATTTTGGAGTCAGTAGAAATAGCTTATTTAAATTTAATGGCTGCTGGTATTAATGCTGCC
CTTGAAGATTTGGTGTTACCTAAAATATCAATCACTCATAATAATTTAACAAATGAAGAC
GAAATTACTTTAATTGAAGAATAGTTTTAATCCTTTTCAATTTCAAGAGACTTTAAAATG
CCTAAAATCTTGCTTATTGGATAAATTGATAGGATTCTAGTTGGAGATCTTACTGTAGAT
GAATACTATTCAGTAGAAAATAAGTATATTGTTGTTGTTGATGTTTATGAAAACAAAATT
ATTTCAATTAAAAAAACTGGATCTGGTTTCTTACCTCCTGAAGATTATGCCAAAATAGTA
TAATTTGCTCTTTCTTCTGCCTTGAAAAAGTGA


>TTHERM_00726340(protein)
MNTKSSPGQIEFIRDGFKINIRGDGRKNDQSREYLIQTGQLKQANGSSFISLNDNSVNIY
TGIKVEIGETDNDEGKIILKIESAQRTEQNRDQENHINSDKNTLIYLEALLNKYLIQNIC
KKSLCIVEKKKCWILNIDVFILESVEIAYLNLMAAGINAALEDLVLPKISITHNNLTNED
EITLIEEQFQSFSISRDFKMPKILLIGQIDRILVGDLTVDEYYSVENKYIVVVDVYENKI
ISIKKTGSGFLPPEDYAKIVQFALSSALKK