Identifiers and Description

Gene Model Identifier

TTHERM_00732640

Standard Name

RPL16 (Ribosomal Protein of the Large subunit #16)

Aliases

PreTt02785 | 119.m00110 | RPL13-E.coli | RPL13A

Description

RPL16 60S ribosomal protein L13/L16; Homolog of yeast RPL16- Human RPL13A- Bacteria RPL13; Ribosomal protein L13 containing protein

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Cellular Component

• intracellular anatomical structure (IEA) | GO:0005622
• ribosome (IEA) | GO:0005840

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00572 ) ribosomal protein L13
• ( TIGR01066 ) ribosomal protein L13
• ( TIGR01077 ) ribosomal protein L13

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_18473.1	2.000147820282363e-173
	Description: ribosomal protein L13 containing protein (271 aa)
Oxytricha	Contig20852.0.g28	6.998089991989877e-78
	Description: Ribosomal protein L13
DictyBase	DDB_G0275881	6.001629673589058e-65
	Description: rpl13a on chromosome: 2 position 5876511 to 5877654
SGD	YNL069C	1.0004460510701209e-64
	Description: RPL16B N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p
WormBase	WBGene00004428	3.9998411574835458e-50
	Description: locus:rpl-16 60S ribosomal protein L13a status:Confirmed UniProt:Q27389 protein_id:CAA86515.1
Stentor Coeruleus	SteCoe_33929	1.0806392777072785e-30
	Description: None

General Information

No Data fetched for General Information

Associated Literature

1. Ref:22052974: Klinge S, Voigts-Hoffmann F, Leibundgut M, Arpagaus S, Ban N (2011) Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Science (New York, N.Y.) 334(6058):941-8

Sequences

>TTHERM_00732640(coding)
ATGATAAAAGGGCAAATTAAGAGGGAGGTTAAAAAGATTAATTAATAGTTAATGTGGGGA
AAGTAAAGGGACTCTTTTAATTAAGAAAATAATAAACCTAAGGACACATTCATTTAAGAT
TAGCAATTGATAAAGGAAATTAATAAAGTAAAAAAAATAAAATTAAGAGAAGGATAAAAA
ATAAATTAAATAAATAAATAGAAATAATAAAGGAAAATGTTCGACAAGCTTGTAGTTATT
GATGCTAAGGGTCACTTATTGGGTAGACTCGCTTCTTACGTTGCCAAGGAACTTTTGAGT
GGTCAAAGAATTGTTGTTGTTAGAACTGAAGCTATTAACATCTCTGGCTCTCTCTTCAGA
AACAGAGTTAAATTCTCCGAATTCCTTAACAAATGGATGAACCACAACCCCAGAAGAGGT
GTTCAACATTTCAGAGCTCCCTCTAGAATTTTCTGGAGAGCCGTCAGAGGTATGCTCCCT
CATAAGACCCCCAAGGGTGCTGCTGCCTTAGAAAGACTAAAAATTTTCGAAGGTATCCCC
ACCCCCTACGACAGAGTTAAGAAGTAAGTCGTTGTCGATGCCTTGAAGGTCTAAAGATTA
AGAAACTCTAGACCCGTCTGCAAGTTGGGTGACTTGAGTGCTTCCGTTGGTTGGGGCAAA
CAAACCCTCATCGAAAAGCTCGAAGAAAAGAGAAGAGCTAGAGCTAAAACCTACCACGAT
AAGAAGGTTAAGTAAGCTGATGCCAGAAAGAAGGAACTCGCTGCTCCTGCTCTTAAGGCT
ATCAAGGATAAACTCGCCTAATTCGGTTACTGA

>TTHERM_00732640(gene)
ATGATAAAAGGGCAAATTAAGAGGGAGGTTAAAAAGATTAATTAATAGTTAATGTGGGGA
AAGTAAAGGGACTCTTTTAATTAAGAAAATAATAAACCTAAGGACACATTCATTTAAGAT
TAGCAATTGATAAAGGAAATTAATAAAGTAAAAAAAATAAAATTAAGAGAAGGATAAAAA
ATAAATTAAATAAATAAATAGAAATAATAAAGGAAAATGTTCGACAAGCTTGTAGTTATT
GATGCTAAGGGTCACTTATTGGGTAGACTCGCTTCTTACGTTGCCAAGGAACTTTTGAGT
GGTCAAAGAATTGTTGTTGTTAGAACTGAAGCTATTAACATCTCTGGCTCTCTCTTCAGA
AACAGAGTTAAATTCTCCGAATTCCTTAACAAATGGATGAACCACAACCCCAGAAGAGGT
GTTCAACATTTCAGAGCTCCCTCTAGAATTTTCTGGAGAGCCGTCAGAGGTATGCTCCCT
CATAAGACCCCCAAGGGTGCTGCTGCCTTAGGTAATAAAATTTTCTAAAATGATTGTTTG
TTTATAAATTGCCAAGCTGACTGACTGATTAAGTAAAGAACGAAATTAACAATATATTGT
CTAACTTATTAAAAAAATGTATAAAAACGCAATATGATTTATCATAATATTAAAATGTTT
TGTTTTTAATTCCCCTTATTTAATCGCTTTTCACTAGTTTTTAAAGTTTTTCTTGACTAG
TATGGATTAGTGAATAATGAGTAGGTCTTTCAAATCAAGCTTTTGAGATATTTTGTTCAT
TTTATAAGGTGATTTCTTATAAACTAGTAGTTTATACAATTAAAAAACCTTAGCTTCTTT
GCCGAAATATCAAACTAGCAAATCATTTTAAAGGGTTATTATAGCTTTCAAATGTTTAAT
TGAATTTTCATCAAAACAAAAATTGCAAAAACATTAAGATTACTAGGTAGAATAAATGCA
AAAATAAATATGACTACTAACTATACAATTTCAAATTAACAACTATTTTCAAGAGTATTA
AAGGAAATTGAGAGTGTTATGCAAAACACTTGTATCTATTTATCTCCTTCTCATAATATC
AAAAAACAGTTACTATCTATCTATATATCTTCAAAGGAGTATTAAAGTATGAAATTAGTA
GAATTCGAAGCTGAAACAAAATTAATTAAGTTTTATATAGCATTTAAATATCCATAGAGC
AATTTATCACACAGCATATTAAAAAAGCATAGGTTATTTATTATATCTTATTCTAATCTT
AGCAGACTTGCAAAATTATTTTTAGAATATTGATGTAGGATTTTTGATGCTTTGAACAAT
ATAATAAGGTAGAATCAATATTAAATTTGATTGCTAAATCTACTTTGCTACATAAGCAAA
AAAAGAATATGCATTTGAATACTTTTTGAAAACTTTCACTATAAACCGATTGTTTGAATG
AATTAATAAATAAATGAGTGCATTTATGAATGAATGATTTGAAAATATTTGTTATAAAAA
AGTATTTCTGACCTAATTTAGATAAAAATAAATACCCTTTAGGTTGAATTATACATAAAC
AATCTTAATAAACTAAACAAAACAAAACACATTAAACAAGACAATAATATTTTTAATTAG
ATTCTTAAAGTTTTAATTAGTTTGGCTATTTATAAAATGAAAAAATTTATTTTAACCATC
AACTCATCAATCTTATTTTATAATAAACAGAAAGACTAAAAATTTTCGAAGGTATCCCCA
CCCCCTACGACAGAGTTAAGAAGTAAGTCGTTGTCGATGCCTTGAAGGTCTAAAGATTAA
GAAACTCTAGACCCGTCTGCAAGTTGGGTGACTTGAGTGCTTCCGTTGGTTGGGGCAAAC
AAACCCTCATCGAAAAGCTCGAAGAAAAGAGAAGAGCTAGAGCTAAAACCTACCACGATA
AGAAGGTTAAGTAAGCTGATGCCAGAAAGAAGGAACTCGCTGCTCCTGCTCTTAAGGCTA
TCAAGGATAAACTCGCCTAATTCGGTTACTGA

>TTHERM_00732640(protein)
MIKGQIKREVKKINQQLMWGKQRDSFNQENNKPKDTFIQDQQLIKEINKVKKIKLREGQK
INQINKQKQQRKMFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFR
NRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIP
TPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARAKTYHD
KKVKQADARKKELAAPALKAIKDKLAQFGY