Identifiers and Description

Gene Model Identifier

TTHERM_00094000

Standard Name

RDN2 (RDr1-associated Nucleotidyltransferase)

Aliases

PreTt16555 | 6.m00629 | 3836.m02213

Description

RDN2 RNA-dependent RNA polymerase-associated nucleotidyltransferase; Nucleotidyltransferase; exhibits RNA terminal uridine transferase activity in vitro; involved in 23-24 nt small RNA metabolism

Genome Browser (Macronucleus)



Genome Browser (Micronucleus)

External Links

Gene Ontology Annotations

Cellular Component

Domains

  • ( PF01909 ) Nucleotidyltransferase domain
  • ( PF03828 ) PAP/25A associated domain

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_02566.1 2.0004485223439647e-69
Description: hypothetical protein (538 aa)
DictyBase DDB_G0268914 0.00000000000009996062864481225
Description: DDB_G0268914 on chromosome: 1 position 2371552 to 2385174
Oxytricha Contig10883.0.g40 0.000000000004997916451710233
Description: Nucleotidyltransferase domain
WormBase WBGene00001596 0.0000000039998859049333245
Description: locus:gld-2 Poly(A) RNA polymerase gld-2 status:Confirmed UniProt:O17087 protein_id:CCD72661.1

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:22706992: Talsky KB, Collins K (2012) Strand-asymmetric endogenous Tetrahymena small RNA production requires a previously uncharacterized uridylyltransferase protein partner. RNA (New York, N.Y.) 18(8):1553-62
  2. Ref:20622019: Talsky KB, Collins K (2010) Initiation by a eukaryotic RNA-dependent RNA polymerase requires looping of the template end and is influenced by the template-tailing activity of an associated uridyltransferase. The Journal of biological chemistry 285(36):27614-23
  3. Ref:19656801: Couvillion MT, Lee SR, Hogstad B, Malone CD, Tonkin LA, Sachidanandam R, Hannon GJ, Collins K (2009) Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila. Genes & development 23(17):2016-32
  4. Ref:19451546: Lee SR, Talsky KB, Collins K (2009) A single RNA-dependent RNA polymerase assembles with mutually exclusive nucleotidyl transferase subunits to direct different pathways of small RNA biogenesis. RNA (New York, N.Y.) 15(7):1363-74

Sequences

>TTHERM_00094000(coding)
ATGGAAGGCGATTTCTTTTAGCAAACATTTCTAAAATATATAAAGTATAGACCAAGCAAG
AATATAAATGTGCATTAGTATTTATTGAAGAAATTAGAAGTTGAGTAATTAAGTTAAAGT
TAATTATTAAGCTTAAAAAATAGTTTAGATGATTTTATTCGTAAATATAATTTTCATAAT
GATGAATGGATTCTAATTAGTCTAATTGAAAATTTAGCACATTCAGACTTATTATTTTCA
AGCGATACTGAAAAATATATTTTAATTATTAAGAAAAGATTCTACCTCAATTTACTGAAT
AAACTTGAGAATAATATTTCAAGTAAATTTGATCTTTAGGAGCTCTAGAAGTGTTTAAAG
TCATTTTACTTAAGCTATAAAAATAATGTTTATGATTTGTTTTTAAATGCTTCAAATGAT
ATTTAAATAATAAAGTAGATAGATAGCAACCTAGGAGAAAAATTAAAAAAAATTGAAAAG
CATGTATCTGAGATTTTAAAGAGGCTTAAAAGTAATGAATCGTAGTAAATGTCTATTAAT
TAGAATGAGTAGAACATCTAATAAAATAAAGAAAATATTAATGAAATAACCAGTAGCAAT
TAATTAGAAATTTTATTAAATTAAATTTATAAGTAAGAAAAGATCAGTATTTAGTTTAAT
GAAGAATTACTTAATCAAGAAGTCAATATGGTAAATTAAATTGTGAGTGAGATGAATTTA
AATAAAATTATTGGGCTATAAAATGTGTATGTTCATCCGTATGGGTCAGTTGTTAGTGGG
TTTGGTTAGAATGATAGTGACATTGATATAAGCATAAATACAGATTGCTATTTAGATGAA
AGAGTATTTCTTTCTCTTATTTATGATTTCATGAAAAATTATTTGCATAAATATAAAATC
AAATATTAAAAACTTGAATTAAAATTAGATGCGCGTATTCCTTTAATAACTCTTGTTAAA
CAGAAAGATAATGTTAATTTGAAAAGTAATACAGTTTCAATAGACATATGTATAAATAAT
CTACTAGGATGCGCAAATTCAAAAATGCTAAAAGTTATATCTTAGATTCATCCCTTAGTA
AAGTAGCTAGGAATAATCATTAAATATTGGGCGAAGTAGAATGGTCTTATAAGCAAAAAA
ACTCTTAGTTCATATGCATTTATCCTCATAATGATCTGCTTTTTATAGAGAAAGAAGCTA
ATTGATCCTTATTTTTAAGAGAAAGTTTAAAAAAGATAAAGTGATCCAAAATATTCTACT
TTGATTAAGAGGACAAAGGAAACTGATTAGGAATTTTAAACAAACCTTTATTATGTGCAA
GATCCCTCGCATTTACAGAAATCTCTAAAAAAGTATAAAGAAAACAATCCAAACTAAAAA
ACTTTATTAGACATGAATCTTGCAAGCTTATTCAGTGAGTTTATTGAATATTACTCAGAC
ACCACTGATGAGAATAGAAGATATATAGATATTATGAATAATTATATAGTAAAATCATAT
AATAAAAATTTATTCTTTTATATTATTGACCCATTTGATAATTATCATAACCCAGGAGAA
AGAAGCAGAGTAGAGAATATAGATGATAACATATTTATAAATAGATTTAGGTTTGCTAAG
TAAAAATTGCAAGACAAACAATATTCGCAAATATTTGAATTAAAATTTCAATGA


>TTHERM_00094000(gene)
ATGGAAGGCGATTTCTTTTAGCAAACATTTCTAAAATATATAAAGTATAGACCAAGCAAG
AATATAAATGTGCATTAGTATTTATTGAAGAAATTAGAAGTTGAGTAATTAAGTTAAAGT
TAATTATTAAGCTTAAAAAATAGTTTAGATGATTTTATTCGTAAATATAATTTTCATAAT
GATGAATGGATTCTAATTAGTCTAATTGAAAATTTAGCACATTCAGACTTATTATTTTCA
AGCGATACTGAAAAATATATTTTAATTATTAAGAAAAGATTCTACCTCAATTTACTGAAT
AAACTTGAGAATAATATTTCAAGTAAATTTGATCTTTAGGAGCTCTAGAAGTGTTTAAAG
TCATTTTACTTAAGCTATAAAAATAATGTTTATGATTTGTTTTTAAATGCTTCAAATGAT
ATTTAAATAATAAAGTAGATAGATAGCAACCTAGGAGAAAAATTAAAAAAAATTGAAAAG
CATGTATCTGAGATTTTAAAGAGGCTTAAAAGTAATGAATCGTAGTAAATGTCTATTAAT
TAGAATGAGTAGAACATCTAATAAAATAAAGAAAATATTAATGAAATAACCAGTAGCAAT
TAATTAGAAATTTTATTAAATTAAATTTATAAGTAAGAAAAGATCAGTATTTAGTTTAAT
GAAGAATTACTTAATCAAGAAGTCAATATGGTAAATTAAATTGTGAGTGAGATGAATTTA
AATAAAATTATTGGGCTATAAAATGTGTATGTTCATCCGTATGGGTCAGTTGTTAGTGGG
TTTGGTTAGAATGATAGTGACATTGATATAAGCATAAATACAGATTGCTATTTAGATGAA
AGAGTATTTCTTTCTCTTATTTATGATTTCATGAAAAATTATTTGCATAAATATAAAATC
AAATATTAAAAACTTGAATTAAAATTAGATGCGCGTATTCCTTTAATAACTCTTGTTAAA
CAGAAAGATAATGTTAATTTGAAAAGTAATACAGTTTCAATAGACATATGTATAAATAAT
CTACTAGGATGCGCAAATTCAAAAATGCTAAAAGTTATATCTTAGATTCATCCCTTAGTA
AAGTAGCTAGGAATAATCATTAAATATTGGGCGAAGTAGAATGGTCTTATAAGCAAAAAA
ACTCTTAGTTCATATGCATTTATCCTCATAATGATCTGCTTTTTATAGAGAAAGAAGCTA
ATTGATCCTTATTTTTAAGAGAAAGTTTAAAAAAGATAAAGTGATCCAAAATATTCTACT
TTGATTAAGAGGACAAAGGAAACTGATTAGGAATTTTAAACAAACCTTTATTATGTGCAA
GATCCCTCGCATTTACAGAAATCTCTAAAAAAGTATAAAGAAAACAATCCAAACTAAAAA
ACTTTATTAGACATGAATCTTGCAAGCTTATTCAGTGAGTTTATTGAATATTACTCAGAC
ACCACTGATGAGAATAGAAGATATATAGATATTATGAATAATTATATAGTAAAATCATAT
AATAAAAATTTATTCTTTTATATTATTGACCCATTTGATAATTATCATAACCCAGGAGAA
AGAAGCAGAGTAGAGAATATAGATGATAACATATTTATAAATAGATTTAGGTTTGCTAAG
TAAAAATTGCAAGACAAACAATATTCGCAAATATTTGAATTAAAATTTCAATGA


>TTHERM_00094000(protein)
MEGDFFQQTFLKYIKYRPSKNINVHQYLLKKLEVEQLSQSQLLSLKNSLDDFIRKYNFHN
DEWILISLIENLAHSDLLFSSDTEKYILIIKKRFYLNLLNKLENNISSKFDLQELQKCLK
SFYLSYKNNVYDLFLNASNDIQIIKQIDSNLGEKLKKIEKHVSEILKRLKSNESQQMSIN
QNEQNIQQNKENINEITSSNQLEILLNQIYKQEKISIQFNEELLNQEVNMVNQIVSEMNL
NKIIGLQNVYVHPYGSVVSGFGQNDSDIDISINTDCYLDERVFLSLIYDFMKNYLHKYKI
KYQKLELKLDARIPLITLVKQKDNVNLKSNTVSIDICINNLLGCANSKMLKVISQIHPLV
KQLGIIIKYWAKQNGLISKKTLSSYAFILIMICFLQRKKLIDPYFQEKVQKRQSDPKYST
LIKRTKETDQEFQTNLYYVQDPSHLQKSLKKYKENNPNQKTLLDMNLASLFSEFIEYYSD
TTDENRRYIDIMNNYIVKSYNKNLFFYIIDPFDNYHNPGERSRVENIDDNIFINRFRFAK
QKLQDKQYSQIFELKFQ