Identifiers and Description

Gene Model Identifier

TTHERM_00094040

Standard Name

RDN1 (Rdr1-associated nucleotidyltransferase 1)

Aliases

PreTt16559 | 6.m00633 | 3836.m02217

Description

RDN1 RNA-dependent RNA polymerase-associated nucleotidyltransferase; associated with Rdr1; exhibits terminal RNA uridine transferase activity in vitro

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF01909 ) Nucleotidyltransferase domain
  • ( PF03828 ) Cid1 family poly A polymerase

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_02566.1 1.000008670162283e-147
Description: hypothetical protein (538 aa)
Oxytricha Contig10883.0.g40 0.00000000000020009182674645818
Description: Nucleotidyltransferase domain
DictyBase DDB_G0278425 0.000000000010004361180063202
Description: DDB_G0278425 on chromosome: 3 position 866714 to 870080
WormBase WBGene00009284 0.0000000020002373268528243
Description: status:Partially_confirmed UniProt:G5EFM8 protein_id:CAB07197.1
WormBase WBGene00009201 0.0000000020002373268528243
Description: status:Partially_confirmed UniProt:H2L2C5 protein_id:CCE72265.1

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:22706992: Talsky KB, Collins K (2012) Strand-asymmetric endogenous Tetrahymena small RNA production requires a previously uncharacterized uridylyltransferase protein partner. RNA (New York, N.Y.) 18(8):1553-62
  2. Ref:20622019: Talsky KB, Collins K (2010) Initiation by a eukaryotic RNA-dependent RNA polymerase requires looping of the template end and is influenced by the template-tailing activity of an associated uridyltransferase. The Journal of biological chemistry 285(36):27614-23
  3. Ref:19451546: Lee SR, Talsky KB, Collins K (2009) A single RNA-dependent RNA polymerase assembles with mutually exclusive nucleotidyl transferase subunits to direct different pathways of small RNA biogenesis. RNA (New York, N.Y.) 15(7):1363-74

Sequences 

>TTHERM_00094040(coding)
ATGAATATTAATTTGACTGATAAGTAAAAAATATATAGCAATGTCATCAAAAATGCATTA
GAAAAAATTTACAAAAATGATAAAGTAGATATTTTAAACTTAATTAATACAAGCTTGGGC
TGTTAGACTATAGAAATTAAATACGATGTGGAATTCCACTAGTTACTTGCTCAATATTTT
CAAAATATGCGTTATTAAGATACAAAGGATAAAGAAGATGTGCTTTAAAAACTGCTTGAG
TAATGCCTCAGTCAAAATCTAATTTTAAATACTTAAAAAAGTAAACTTTCTAAACAAATC
ATCATTTTGAAGCGCCTAAGAAGAATTTAATAAAAGCTTAAGGATGACCCAAAAAATGCT
TTGGATCATTTGATAGAAGAATACGACTAAGAGGAGGAAAATTGTGATGAAGAAGTGCTA
TTATAGCGTTTCGAATAGGATAAAACAGACTTAAGAATGCAAATAGAAGACAATGTTAAA
GATTTAAAAAAAGAAAATATAAAATATCTGTTGTTGAAAAAATAAAATAATTAAGAAAAA
AATATTTAAAATGAATAAAATTTAGAATAAATTCTTTTAGATGTATATAATCAGCAAAAA
ATTGAAGAGAGTTTCTCAAAAAGACTTCTATAAGAAGTTAATTTTATCAGAAAGATCATT
AGTATGATGAGGCTTAAGGAGTTATTTGGCTTAGAGTATGTCACAGTATAGCCTTATGGT
TCTATAGTTAGTGGATTTGCTTAAAAATCTAGCGATGTTGATATCAGTATTAATACTAAC
TGCTATATAGATGAGAGCTCATTTATATAACTTCTTCATAACTTCATAAAGCAGTATTGC
AGTAATAAATCAATTAAGAATGTTGAAACTGAGCCAGTTCTTCAGGCCTAAACTCCGTTG
CTCAAATACACAAGGAAAGATACAGTAGATCAATAATAAATAAAAATAGATATAGATATT
TGTGTTAACAATATCTTGGGATGCACTAATTCATTAATGCTTTACACTCTTTCCTAACTG
CATCCAAAAATTTAATAATTAGGAATTATCATTAAACACTGGGCTAAGTAAAGAGGTGTA
TCCAGTAAAAGTCACTTATCCTCCTATTCCTTTATTTTGATGATGTTTTCCTTCCTTTTC
AGAGAAAAGATATTGAACTCAGAGTTTGTCAAAAAAAGTAAAAGTAAAGAAAATTAGTGT
TAAGTCAAAATTAAAAGAAAAAAAAAGGATGGTGAATAAATATTTTAAACTAATTTATAC
TTTTATAGCAATGTAGAAGACTTAAAAATGAAATTAGCTATATGGAGAAAAGAAAAAAAC
TTGCCTTCCTTAGATGATGTATCACTAAGCTAACTTTTTATAGATTTTATAAAATTCTAT
TAATCTAGCTTTAATTTTAAAGACAAGAGGTTTATTTCCATTTTTAACTTTGATGTCAAT
TACAGCAATAACAATTTTAAATATGAACTTTATGATGAAAATTATTACTTCAATATTGAA
GATCCATTTGATACTAAGCACAATCCTGGATAAAAAACTCAAAACAAATAAGAATAATAT
AAACAGGCCTTTGATGATGCTTTAAATTAAATTGAAAGTAAGTAATATAATCTGCTATTC
TCATCTAAATGA


>TTHERM_00094040(gene)
ATGAATATTAATTTGACTGATAAGTAAAAAATATATAGCAATGTCATCAAAAATGCATTA
GAAAAAATTTACAAAAATGATAAAGTAGATATTTTAAACTTAATTAATACAAGCTTGGGC
TGTTAGACTATAGAAATTAAATACGATGTGGAATTCCACTAGTTACTTGCTCAATATTTT
CAAAATATGCGTTATTAAGATACAAAGGATAAAGAAGATGTGCTTTAAAAACTGCTTGAG
TAATGCCTCAGTCAAAATCTAATTTTAAATACTTAAAAAAGTAAACTTTCTAAACAAATC
ATCATTTTGAAGCGCCTAAGAAGAATTTAATAAAAGCTTAAGGATGACCCAAAAAATGCT
TTGGATCATTTGATAGAAGAATACGACTAAGAGGAGGAAAATTGTGATGAAGAAGTGCTA
TTATAGCGTTTCGAATAGGATAAAACAGACTTAAGAATGCAAATAGAAGACAATGTTAAA
GATTTAAAAAAAGAAAATATAAAATATCTGTTGTTGAAAAAATAAAATAATTAAGAAAAA
AATATTTAAAATGAATAAAATTTAGAATAAATTCTTTTAGATGTATATAATCAGCAAAAA
ATTGAAGAGAGTTTCTCAAAAAGACTTCTATAAGAAGTTAATTTTATCAGAAAGATCATT
AGTATGATGAGGCTTAAGGAGTTATTTGGCTTAGAGTATGTCACAGTATAGCCTTATGGT
TCTATAGTTAGTGGATTTGCTTAAAAATCTAGCGATGTTGATATCAGTATTAATACTAAC
TGCTATATAGATGAGAGCTCATTTATATAACTTCTTCATAACTTCATAAAGCAGTATTGC
AGTAATAAATCAATTAAGAATGTTGAAACTGAGCCAGTTCTTCAGGCCTAAACTCCGTTG
CTCAAATACACAAGGAAAGATACAGTAGATCAATAATAAATAAAAATAGATATAGATATT
TGTGTTAACAATATCTTGGGATGCACTAATTCATTAATGCTTTACACTCTTTCCTAACTG
CATCCAAAAATTTAATAATTAGGAATTATCATTAAACACTGGGCTAAGTAAAGAGGTGTA
TCCAGTAAAAGTCACTTATCCTCCTATTCCTTTATTTTGATGATGTTTTCCTTCCTTTTC
AGAGAAAAGATATTGAACTCAGAGTTTGTCAAAAAAAGTAAAAGTAAAGAAAATTAGTGT
TAAGTCAAAATTAAAAGAAAAAAAAAGGATGGTGAATAAATATTTTAAACTAATTTATAC
TTTTATAGCAATGTAGAAGACTTAAAAATGAAATTAGCTATATGGAGAAAAGAAAAAAAC
TTGCCTTCCTTAGATGATGTATCACTAAGCTAACTTTTTATAGATTTTATAAAATTCTAT
TAATCTAGCTTTAATTTTAAAGACAAGAGGTTTATTTCCATTTTTAACTTTGATGTCAAT
TACAGCAATAACAATTTTAAATATGAACTTTATGATGAAAATTATTACTTCAATATTGAA
GATCCATTTGATACTAAGCACAATCCTGGATAAAAAACTCAAAACAAATAAGAATAATAT
AAACAGGCCTTTGATGATGCTTTAAATTAAATTGAAAGTAAGTAATATAATCTGCTATTC
TCATCTAAATGA


>TTHERM_00094040(protein)
MNINLTDKQKIYSNVIKNALEKIYKNDKVDILNLINTSLGCQTIEIKYDVEFHQLLAQYF
QNMRYQDTKDKEDVLQKLLEQCLSQNLILNTQKSKLSKQIIILKRLRRIQQKLKDDPKNA
LDHLIEEYDQEEENCDEEVLLQRFEQDKTDLRMQIEDNVKDLKKENIKYLLLKKQNNQEK
NIQNEQNLEQILLDVYNQQKIEESFSKRLLQEVNFIRKIISMMRLKELFGLEYVTVQPYG
SIVSGFAQKSSDVDISINTNCYIDESSFIQLLHNFIKQYCSNKSIKNVETEPVLQAQTPL
LKYTRKDTVDQQQIKIDIDICVNNILGCTNSLMLYTLSQLHPKIQQLGIIIKHWAKQRGV
SSKSHLSSYSFILMMFSFLFREKILNSEFVKKSKSKENQCQVKIKRKKKDGEQIFQTNLY
FYSNVEDLKMKLAIWRKEKNLPSLDDVSLSQLFIDFIKFYQSSFNFKDKRFISIFNFDVN
YSNNNFKYELYDENYYFNIEDPFDTKHNPGQKTQNKQEQYKQAFDDALNQIESKQYNLLF
SSK