Identifiers and Description

Gene Model Identifier

TTHERM_00094210

Standard Name

RPC5 (RNA polymerases I and III subunit 5)

Aliases

PreTt16576 | 6.m00650 | 3836.m02233

Description

RPC5 DNA-directed RNA polymerase I and III subunit RPAC1; Fifth largest subunit of RNA polymerases I and III; homolog of RPC40 in yeasts and RPA40 in humans; expressed in macronucleus of vegetative cells and weakly in early stages of conjugation; Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase Subunit

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF01000 ) RNA polymerase Rpb3/RpoA insert domain
  • ( PF01193 ) RNA polymerase Rpb3/Rpb11 dimerisation domain

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

  • ( SD02176 ) Macronucleus: HA tagged RPC5
  • ( SD02718 ) Macronucleus: HA tagged RPC5

Homologs

No Data fetched for Homologs

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:15470252: Mochizuki K, Gorovsky MA (2004) RNA polymerase II localizes in Tetrahymena thermophila meiotic micronuclei when micronuclear transcription associated with genome rearrangement occurs. Eukaryotic cell 3(5):1233-40

Sequences 

>TTHERM_00094210(coding)
ATGTCAAATAAAACTTAAAAAATGAAGAAAAATATTGTCTTCACCAACGAAGGCATTCAA
CACAGCTAGGAAATGAACTATAGCGCTGCTTTTACTAGTGAAGAAGATTTCAATACATTC
AAGGAAAACATTAAAATAGAAGTTATTAGATATGATAATAAAAATAAAGAATTAGAATTT
GATTTAATGGGTGTCGATGCTCCTATTGCTAACGCTTTGAGAAGAATTATGATTGCAGAA
GTTCCTACAATGGCTATCCACAAGGTTTATATTTACTAAAATACTTCTATTATTCCTGAT
GAAGTTTTGGCTCACAGACTTGGTTTAATTCCTATTTATGCTGACCCTCGTCTTTTCGAA
GAAAAGCAAGAAGAAGACGAGTATAATGAAAAAAATTCTTTAAAGTTTACATTAAAGATT
AAATGCTCTAAGAAAGAATAGTACAAAAATTACTCTGAAGCTGATTTAGAAAATTTAACA
CCTGAAACCTACTTAGAAAATGCTATTGTCTATAGCGGTGATTTCAAATGGGTTTCTTAA
GGAGAATAAAATAAAAAATTTGAAGAGAATCCAATCAGAATGGTCCATGATAATATTATT
GTAGCTAAGTTAAGAGAAAACCAAGAAATTATTTGTGAAGTTATTTGTTAAAAGGGTATT
GGAAAAACACATGCCAAATGGTCTCCTGTTTGTACTGCTTACTATCGTTTAATGCCTGAA
ATAAACATAAATAGTGATATCACCGGAGCTAAAGCTCAAGAATTGAAAGAACGTTGCCCT
CTTAAAGTTTATGATGTTTAAAATAATAAGGCTATTGTTTCTAACGAAAGAGCTTGCACT
ATGTGCAGAGAATGCATAAGAGAAGATGAAGAATTCAATTCAAAGATTGAATTGGCCAAA
AAGAAAGAGCATTTTATTTTTACTGTAGAAAGCGTTGGAATCTACGAACCTCACGAGATA
GTAAAGGAAGCAATCTAGATATTAAAATAAAAAGCATCTAGTTTTATGCTAAACCTATGA




>TTHERM_00094210(gene)
ATTTATTAATGTAAAAAATAATTATTAAATTTGTCTTTAAGTTAAAAAATAAAGAGCAAT
AAAAAAGATTTTTAAATAATAAAAACTTTTAAGTAGTAGAATACAAAATATATAGCTAAC
TAATATTAAAATATGTCAAATAAAACTTAAAAAATGAAGAAAAATATTGTCTTCACCAAC
GAAGGCATTCAACACAGCTAGGAAATGAACTATAGCGCTGCTTTTACTAGTGAAGAAGAT
TTCAATACATTCAAGGAAAACATTAAAATAGAAGTTATTAGATATGATAATAAAAATAAA
GAATTAGAATTTGATTTAATGGGTGTCGATGCTCCTATTGCTAACGCTTTGAGAAGAATT
ATGATTGCAGAAGTTCCTACAATGGCTATCCACAAGGTTTATATTTACTAAAATACTTCT
ATTATTCCTGATGAAGTTTTGGCTCACAGACTTGGTTTAATTCCTATTTATGCTGACCCT
CGTCTTTTCGAAGAAAAGCAAGAAGAAGACGAGTATAATGAAAAAAATTCTTTAAAGTTT
ACATTAAAGATTAAATGCTCTAAGAAAGAATAGTACAAAAATTACTCTGAAGCTGATTTA
GAAAATTTAACACCTGAAACCTACTTAGAAAATGCTATTGTCTATAGCGGTGATTTCAAA
TGGGTTTCTTAAGGAGAATAAAATAAAAAATTTGAAGAGAATCCAATCAGAATGGTCCAT
GATAATATTATTGTAGCTAAGTTAAGAGAAAACCAAGAAATTATTTGTGAAGTTATTTGT
TAAAAGGGTATTGGAAAAACACATGCCAAATGGTCTCCTGTTTGTACTGCTTACTATCGT
TTAATGCCTGAAATAAACATAAATAGTGATATCACCGGAGCTAAAGCTCAAGAATTGAAA
GAACGTTGCCCTCTTAAAGTTTATGATGTTTAAAATAATAAGGCTATTGTTTCTAACGAA
AGAGCTTGCACTATGTGCAGAGAATGCATAAGAGAAGATGAAGAATTCAATTCAAAGATT
GAATTGGCCAAAAAGAAAGAGCATTTTATTTTTACTGTAGAAAGCGTTGGAATCTACGAA
CCTCACGAGATAGTAAAGGAAGCAATCTAGATATTAAAATAAAAAGCATCTAGTTTTATG
CTAAACCTATGAGATAGATAGATAGATTTACAAATATTAGTTATATGATTTAATAATAAA
TCATTGAATATTCAACAAATATAAATCTTAATAAAAAAGAAATAAAATTAAATTAAATTT
AACAATTTGATTGCTTCATTAGTTATGTTGATCAAATAAATACATCAAGAACAAATAAAT
TATAAATTTTTAATAAGTCTATAGATCAAATTCAATTAAAAAGAAAATTTTCTTATTTTT
TGTTTATAGTTTTGAAATTAA



>TTHERM_00094210(protein)
MSNKTQKMKKNIVFTNEGIQHSQEMNYSAAFTSEEDFNTFKENIKIEVIRYDNKNKELEF
DLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIYADPRLFE
EKQEEDEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLENAIVYSGDFKWVSQ
GEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIGKTHAKWSPVCTAYYRLMPE
ININSDITGAKAQELKERCPLKVYDVQNNKAIVSNERACTMCRECIREDEEFNSKIELAK
KKEHFIFTVESVGIYEPHEIVKEAIQILKQKASSFMLNL