Identifiers and Description

Gene Model Identifier

TTHERM_00101150

Standard Name

RRM56 (RNA recognition motif-containing protein 56)

Aliases

PreTt22914 | 7.m00363

Description

RRM56 CC1 family splicing factor; splicing factor- CC1-like family protein

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00076 ) RNA recognition motif
• ( TIGR00087 ) 5'/3'-nucleotidase SurE
• ( TIGR00449 ) tRNA-guanine transglycosylases, various specificities
• ( TIGR01622 ) splicing factor, CC1-like family
• ( TIGR01628 ) polyadenylate binding protein, human types
• ( TIGR01642 ) U2 snRNP auxilliary factor, large
• ( TIGR01645 ) poly-U binding splicing factor, half-pint
• ( TIGR01661 ) ELAV/HuD family splicing factor

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_00288.1	9.997093137033517e-262
	Description: splicing factor, CC1-like family protein (548 aa)
Oxytricha	Contig10134.0.g98	8.99739772315193e-58
	Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase	WBGene00021921	2.0008113830639685e-30
	Description: status:Partially_confirmed UniProt:Q8MXS6 protein_id:CCD74061.1
Stentor Coeruleus	SteCoe_3588	5.74952226429356e-19
	Description: None
DictyBase	DDB_G0283687	0.0000000000002999981760818895
	Description: DDB_G0283687 on chromosome: 4 position 982205 to 984735
SGD	YER165W	0.0000000008996637801615584
	Description: PAB1 Poly(A) binding protein, part of the 3-end RNA-processing complex, mediates interactions between the 5 cap structure and the 3 mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00101150(coding)
ATGGATATAGATCTAGACTAAGCTGAAGCTCTTTTTAACTAATAGGCAAATCAAGGATTA
GAAAACGGTTCCAACGGGGACATTAGAGATGACAAAGATGAAAAAAAGAGCAAAAAGAAG
AAGCATCATAAATCAAAAAGCAGATCAAGATCCAACAAGAAGAAAAGCAAAAAGAAACAT
AGCAGTAGATCCAGATCCAGATCTGGCAAAAAAAGCAAAAAGCATCGTTCCAGATCATCA
AAGAAGGACAAGAAGCACCATCACTCTTCTGAAAGAAAAACTGAAGAAAAATAGAGCTAA
GAGGCTATCTCGAAGTCTTAAGAAACAAGACAGCTAACATCTGTCGAAAGAATCGAGCTA
AAAAAGAGGGAGCTTGAGCAATAAATTGAAAAATTAAACAAGGATGCAGAAGATGCTGCC
AGAGAAGATTTAACTGTTATGATTTATTAGCTACCTTCAAAGGCTGAGGAAAAAGATATT
TGGCGTTACTTAACCAAACATTGTGGTGCTTCTAAAGTTAGAGATATTAAGCTCATTAGA
GATTAAAAGACTAAGAAGTCTAAGGGTGTTGCTTATGCTGAATTTTATATTAAGGAAGAT
GTTGACAAAGCTTTGGCTGCTGACACTAAACCTTTCTTCTTAAAAGGTGAAGAAGTGCCA
ATGTCTGAAGTGAGAATCCAGCATTCATAAGCCGAAAAGAACAGAGCTGCCTTAGCTGCA
AGAGAAATTAAGAGACAAAGAGCAGAAGCCTTAAAAGAGCAATTAGCCAAGTTACAAGAA
GGTCCTGTTAAAGTTTTTGTTGGTGGTTTAAATGGAAAACTAGCTGATATGAACGAATAA
GATTTAAAGGATATATTCTAAAAATACGGTGATATTGAATCTGTTGAATTGCCTGTTAAT
GCTTAAGGAAAATGCCTTGGTTTTGGTTACTTGACTTTCAAAAAGAAAAGTGATGCTCAT
GAAGCTATTAAGATGATGAATGGATTTAAATTATAAGATCAAAAGATTTCTGTTACTCCT
GTAGCAGTTAATTTATCTTTCGCTCCCGTTCAACCTCTTTTCCCTTCAAGTTTAGGAGGA
ACTCAAACTCAAGATAACATTGATTTAGATCAGAATGAAAATAAAGTTTTCTTGCACTCA
GCAGCCAAAAAGCTGGAATTAATGAAGAAATTAGCAGGTAACTCTACTCTTTCTGTGCCT
GGAACTGAAACAGCTGCTTAGCCTACTGTAAACACTCCACTTCCTATTCCTGGTATAGCC
AATTTACCAAGCTTGAATATAGCTCAGAATCCTTAAATTCAAAATAACTTCATGGCTGGA
AATAGACCTCCTACAAGTTTGTTGCCCACCAACTATATAGTATTAGTAAATATGTTTGCA
GAAAGTGATTTCAAAAATGATCCCTCTTTCTTTGCAGATCTTAAAGAAGATGTTAGTGAG
GAATGCAAAAAGTATGGTGATGTTGTTGAAGTATTTGTAGCAATTCGTAGTCCTTGTGGT
TCTGTATTTGTATTGTTTAATGATGCTGTTGGTGCAGTTACTTGTGCAAAGAATATGGAT
GGAAGAATGTTTAATGGAAGACCTATTTCTTCTTATTGTATTTCAGAAGATACTCTACAA
GATGAATTACAAGAACATCTCTGA

>TTHERM_00101150(gene)
ATGGATATAGATCTAGACTAAGCTGAAGCTCTTTTTAACGTAATTAAATTTACCTTTTAA
ATCTCTTAAAAATAACATAGCGCTATAAAATTTACTTTGATAAATAGTTAATATTTCACT
AATTCCCATTTATTTTGTTACCATTTTTAACTTAAATCATCAATTAGGTGGCTATTTACA
CTAAAAACAAACAAAGTATGCCAAAAATAATAAAAATTTTTTAGGTCTTTAATATAAAAC
AATAAAAGCATTTGCTCTTTAAATTTAGGTGCACATAAATAATTAAAAAAAAGATAACTC
ACCTGAAAATTCGTTTAAAAATGCCAATAGCTTCATCTTTTGAGAAAGATAATTTTTGCT
AGACATTTTTTTCAATTTCAGAATCAAAATTAGATTTAAAATTTGAAAAATCAGCGAGGA
AAATGCAATTAATAAATAAAAAAAACTTATTTAATATTCAAACAAATTAATAATTTATAA
TATCTGAAACTTTTATATGTAAAATAAAAGAATAATTTTCTAAATGTCTTAAGGAAAAGC
AATTTTTTGTTTAACCATTTAATTATAATAATTTTTCCCATAAAATTTTTAAAAAAATAT
GTGAATAGCCCTCTAGTTTTAAGAAATAATTTAGAGATATTAAATATTTTGTAATGCGTT
ATTTTGTTTGTGGAAATAATACATAATTTTTCTGAATATCTTCCTTTTTACCATGATTCA
GGCTCTAGAGAAAAATTATCCGAAAATGAGTTGCCATCATTCATTACACTACTTTGCCAC
ACATTCCCACATAATTGTCACTGCCAACAACAACTGACACTACTTAAATCTCACTTTAGT
TTGGAATAAATTAGAAGAACAATAAAAAATAAATAAAATAGGTAGTTAGTTAGTGAGTAA
ATAGAGATTAAAGGAGAAGATTCAAACAAACTAAACTAAATCGTTTTGTTAGTTAGTTGT
GGTGCGGGAAGTTGTTGTTGACCTTCCTTTTTAAATAAATTATAAAAAAATATAATTTAG
GGAAATTTTGAAGTTTTTTGTTTGCCTCAACTTGAAACTTAAGATAATAAATAAAATAAT
TTTAGGGCTAAAAATTTAAAAACAGATTTTTATAGGATTTTGGAGAATTTTTAGATTATT
AGTTAAATGTTGAATAAGCTTCAGCATTTAATTAATGACAGTGACATTAAAATAAAAAAA
TATAATAGAGTTAATTATTATAGCAGCATATTAATAAATAAATAAAGCATTCATATGAAC
AAGAATTTAGAATATAAAAATGATTCTAACTATCTATCTATCTCTTCTCTCTTATAAAAT
AAATAAAAAAGTAATAGGCAAATCAAGGATTAGAAAACGGTTCCAACGGGGACATTAGAG
ATGACAAAGATGAAAAAAAGAGCAAAAAGAAGAAGCATCATAAATCAAAAAGCAGATCAA
GATCCAACAAGAAGAAAAGCAAAAAGAAACATAGCAGTAGATCCAGATCCAGATCTGGCA
AAAAAAGCAAAAAGCATCGTTCCAGATCATCAAAGAAGGACAAGAAGCACCATCACTCTT
CTGAAAGAAAAACTGAAGAAAAATAGAGCTAAGAGGCTATCTCGAAGTCTTAAGAAACAA
GACAGCTAACATCTGTCGAAAGAATCGAGCTAAAAAAGAGGGAGCTTGAGCAATAAATTG
AAAAATTAAGTAAATTTTATTTATTAAATTACTCTAAAAATAATTCAAGCTAATATCAAT
AATCAAAATATCACTAATATATAATTTTTTTTATCATTAGACAAGGATGCAGAAGATGCT
GCCAGAGAAGATTTAACTGTTATGATTTATTAGCTACCTTCAAAGGCTGAGGAAAAAGAT
ATTTGGCGTTACTTAACCAAACATTGTGGTGCTTCTAAAGTTAGAGATATTAAGCTCATT
AGAGATTAAAAGACTAAGAAGTCTAAGGGTGTTGCTTATGCTGAATTTTATATTAAGGAA
GATGTTGACAAAGCTTTGGCTGCTGACACTAAACCTTTCTTCTTAAAAGGTGAAGAAGTG
CCAATGTCTGAAGTGAGAATCCAGCATTCATAAGCCGAAAAGAACAGAGCTGCCTTAGCT
GCAAGGTATTTAATTAAAATACTTTTTATCATTTATTTTTTTAAAATACTAATTCATATC
TTGTTTCTATTCATTGTTGAAATTAAAGTTATATTTTTTTTAAAATCAATAATTGTTAAA
TGAAAAGAGAAATTAAGAGACAAAGAGCAGAAGCCTTAAAAGAGCAATTAGCCAAGTTAC
AAGAAGGTCCTGTTAAAGTTTTTGTTGGTGGTTTAAATGGAAAACTAGCTGATATGAACG
AATAAGATTTAAAGGATATATTCTAAAAATACGGTGATATTGAATCTGTTGAATTGCCTG
TTAATGCTTAAGGAAAATGCCTTGGTTTTGGTTACTTGACTTTCAAAAAGAAAAGTGATG
CTCATGAAGCTATTAAGATGATGAATGGATTTAAATTATAAGATCAAAAGATTTCTGTTA
CTCCTGTAGCAGTTAATTTATCTTTCGCTCCCGTTCAACCTCTTTTCCCTTCAAGTTTAG
GAGGAACTCAAACTCAAGATAACATTGATTTAGATCAGAATGAAAGTAAGCAAATTATTA
GATAAAAAATATAAAAGATTTTTGTGATAAAAAATAAATAGACGCAAAACATACTTTAAA
TTTTATATTTATTTATTTATTTATTTATTTATTAATATATTAGATAAAGTTTTCTTGCAC
TCAGCAGCCAAAAAGCTGGAATTAATGAAGAAATTAGCAGGTAACTCTACTCTTTCTGTG
CCTGGAACTGAAACAGCTGCTTAGCCTACTGTAAACACTCCACTTCCTATTCCTGGTATA
GCCAATTTACCAAGCTTGAATATAGCTCAGAATCCTTAAATTCAAAATAACTTCATGGCT
GGAAATAGACCTCCTACAAGTTTGTTGCCCACCAACTATATAGTATTAGTAAATATGTTT
GCAGAAAGTGATTTCAAAAATGATCCCTCTTTCTTTGCAGATCTTAAAGAAGATGTTAGT
GGTAATTAAATGATTTAATTGATCAAAAAACTTATTCATATTAAATTAGTTAAGTTAATA
CTAAATATTTTATTATAATTATTTATTAGAGGAATGCAAAAAGTATGGTGATGTTGTTGA
AGTATTTGTAGCAATTCGTAGTCCTTGTGGTTCTGTATTTGTATTGTTTAATGATGCTGT
TGGTGCAGTTACTTGTGCAAAGAATATGGATGGAAGAATGTTTAATGGAAGACCTATTTC
TTCTTATTGTATTTCAGAAGATACTCTACAAGATGAATTACAAGAACATCTCTGA

>TTHERM_00101150(protein)
MDIDLDQAEALFNQQANQGLENGSNGDIRDDKDEKKSKKKKHHKSKSRSRSNKKKSKKKH
SSRSRSRSGKKSKKHRSRSSKKDKKHHHSSERKTEEKQSQEAISKSQETRQLTSVERIEL
KKRELEQQIEKLNKDAEDAAREDLTVMIYQLPSKAEEKDIWRYLTKHCGASKVRDIKLIR
DQKTKKSKGVAYAEFYIKEDVDKALAADTKPFFLKGEEVPMSEVRIQHSQAEKNRAALAA
REIKRQRAEALKEQLAKLQEGPVKVFVGGLNGKLADMNEQDLKDIFQKYGDIESVELPVN
AQGKCLGFGYLTFKKKSDAHEAIKMMNGFKLQDQKISVTPVAVNLSFAPVQPLFPSSLGG
TQTQDNIDLDQNENKVFLHSAAKKLELMKKLAGNSTLSVPGTETAAQPTVNTPLPIPGIA
NLPSLNIAQNPQIQNNFMAGNRPPTSLLPTNYIVLVNMFAESDFKNDPSFFADLKEDVSE
ECKKYGDVVEVFVAIRSPCGSVFVLFNDAVGAVTCAKNMDGRMFNGRPISSYCISEDTLQ
DELQEHL