Identifiers and Description

Gene Model Identifier

TTHERM_00151210

Standard Name

RRM3 (RNA recognition motif-containing protein 3)

Aliases

PreTt20782 | 12.m00456 | 3700.m00176

Description

RRM3 splicing factor u2af large subunit

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF00076 ) RNA recognition motif. (a.k.a. RRM,
  • ( PF08648 ) Protein of unknown function (DUF1777)
  • ( TIGR01642 ) U2 snRNP auxilliary factor, large

Gene Expression Profile

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_05083.1 9.997093137033517e-262
Description: hypothetical protein (568 aa)
Oxytricha Contig1218.1.g100 1.999534248571833e-46
Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase WBGene00006697 1.0000633497921574e-36
Description: locus:uaf-1 status:Confirmed UniProt:Q8MXS2 protein_id:CCD62281.1
DictyBase DDB_G0286395 2.000130478826482e-26
Description: u2af2 on chromosome: 4 position 4405482 to 4407497
Stentor Coeruleus SteCoe_19768 0.00000000000003442477108469977
Description: None
SGD YPR112C 0.00020003864201578029
Description: MRD1 Essential conserved protein that is part of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences 

>TTHERM_00151210(coding)
ATGGATAGAAAATAGAATAAAAAGGAATACAAAAGATCAAGATCTAGAAGTGAAAAGAAG
AGAAAGAAAGAAAAGAAGAGAAAGAATAAAGATAAGAAAAAAAAAGATAAGCATAGTAAG
AAGTCAGATAGAAGATACTCAGAATCTAGAAGCAGTAGTGAAAGTAGCAGATCAAGTAGA
AGCAATTCTCCTAATTAATAAGGAGGTAATGATGATAACAAAATAAAAATCATTCCTTTA
TCATTTCCTAGTAGTGGAAAGCCATAGTAAGAAATTACAACTCCTACATCTGCACAAGGC
GCTAGCACATCAAGTGCAATTCCATCTACTATACTTCAAATTGTAAATAAAGCGCAACAA
AATGTATAAGCAGCAGTTGCATCAAATACAAATCCCTTGAGAGAAAAGAGAAATGCGTTT
AGTTCACCACCAAAAAATACAGGTTCAAACGGATTTGGAGCTCCTGTCTCTGCTGGTGGA
TTAGAGATACCAGGTCTAGGAGGAATTAATATAGGATCAGCTGGAACTAGTGGATTTGAT
ATTGGCATCCCAGGTTTAGGTGGATTAGGAGGTTTTGGCTTACCTTAAGATACTTAAATT
ATTGGAAATAAAATCCCTCCTGCTCTTTAAAAGCAATACATACATGCACTGCGTGTTTAT
ATTGGAAATATCCCTGACCCCGTAGATGTAGAAGATGTTTGTAAATTTGTTTTTGAGCAG
ATGGCTAATGCTGGAGGATTATTAGAGCCAGGAAATCCAATTTAAAGCAAAAAGCATGAT
CCTATAAAAAAATTTATTTTCTTGTAGTTAAGATCTATTGAAGAAACATCTGCTTGTATG
GAGCTAGATGGTATTATTTATAAAGGAAAAAGTTTGAGATTCAGAAGACCAAAAGACTTT
GGTGTTTTGTAAAAAGTAGAAGGTACTCGTCCTGTACCTACTTTAGATAAGACTAAACTT
AAGATTGTTTAAACATAAGTAGAAAATACTTACAATAAGCTTTAAATTATGAATTTGCCT
GAAAATTTCAGCGAAGAGCATGTTATGCAACTATTATTAACTTATGGAGATCTAAAATCA
TTCCATTTGGCAGTTGATAAGATTACTAGTGAATCGAAGGGTTTTGCATTTTGTGAATTT
ATCACTGACAGATCAACTGTAGAATGCTTGAATAAATTAAGTGGTTAATAGATATTGAAT
AAAGTCATAAATGTCAAAAGATGTAATCCTTAACTTGCACCACAACATGAAGAACCGATT
CTTTCACTTGACTAGTTATACAAAAATTTAGTTGAAAACGTTAATAAGACAATCATTGAA
TCTGGCTAAAAGGATATCTAAGAAGATTATTTAAAGAAAATGCTATCAATAAATGCTCCT
AAATATGACGGGTTGATTACAGAAGATGCAACAAATGTGTTAAAGTTGCATAATATTGTC
AATAAGCAATTAATAGAGGAAGATGCGGAGTATCATTTTATTTTTAATGATTTGAAGACA
TAGCTCGATAGAATAGGAAGAACAAAATAAATTATAATTCCTAGAAAGAAAGACAAGTTC
TTAGAAGGAATCGGATTTGTTTTTGTAGAATTTGATAATGAAAGAACAAGCTAAATTGCA
AGCTTTTTACTTTAGAAAATCAAGTACGATGGTAAAGATGTTAAAGCAGAGTTTTACAGT
CCTTAATATTTTGCAGATAGAACATTCTATTGA


>TTHERM_00151210(gene)
ATGGATAGAAAATAGAATAAAAAGGAATACAAAGTAATTAAACTATTTTTATTTAAAAAG
GATTCTATACTAAATAATCTACTCTATATGTTAAAGACATGATTATAAATTTAAATTTAT
GATTTAGACTTACTAATGGTTGATAAGTCATTTTTGAAAAATGTTTTTATAATAGAGATC
AAGATCTAGAAGTGAAAAGAAGAGAAAGAAAGAAAAGAAGAGAAAGAATAAAGATAAGAA
AAAAAAAGATAAGCATAGTAAGAAGTCAGATAGAAGATACTCAGAATCTAGAAGCAGTAG
TGAAAGTAGCAGATCAAGTAGAAGCAATTCTCCTAATTAATAAGGAGGTAATGATGATAA
CAAAATAAAAATCATTCCTTTATCATTTCCTAGTAGTGGAAAGCCATAGTAAGAAATTAC
AACTCCTACATCTGCACAAGGCGCTAGCACATCAAGTGCAATTCCATCTACTATACTTCA
AATTGTAAATAAAGCGCAACAAAATGTATAAGCAGCAGTTGCATCAAATACAAATCCCTT
GAGAGAAAAGAGAAATGCGTTTAGTTCACCACCAAAAAATACAGGTTCAAACGGATTTGG
AGCTCCTGTCTCTGCTGGTGGATTAGAGATACCAGGTCTAGGAGGAATTAATATAGGATC
AGCTGGAACTAGTGGATTTGATATTGGCATCCCAGGTTTAGGTGGATTAGGAGGTTTTGG
CTTACCTTAAGATACTTAAATTATTGGAAATAAAATCCCTCCTGCTCTTTAAAAGCAATA
CATACATGCACTGTAATTTAATAGAAACATTATTATTTATAAATTTCTATCAAAAATAGT
TAAAATAGTTTTTATAAAACATCAAAACATTTTGATTAAAAAGAGGCACTCAATTTAACC
AAATCTAATAAAATTTTTAGAGCATTTTTACTTTTTTTCTTAAAACAATTTAGATAGATC
AAGTAAAATATTAAAATATTAAAATTTTTTATAAAATTATCAGGCGTGTTTATATTGGAA
ATATCCCTGACCCCGTAGATGTAGAAGATGTTTGTAAATTTGTTTTTGAGCAGATGGCTA
ATGCTGGAGGATTATTAGAGCCAGGAAATCCAGTAAATAATTATATTTTTAACAATTGAA
TATTTAATTAATAAATTTATTATGAATTAAAAAAGATTTAAAGCAAAAAGCATGATCCTA
TAAAAAAATTTATTTTCTTGTAGTTAAGATCTATTGAAGAAACATCTGCTTGTATGGAGC
TAGATGGTATTATTTATGTAAATAGGTTTGTTTGCACATAAATGATCTTTAAATTTAAAT
ATCTTTATTATAACAACTATAAAGAAAGGAAAAAGTTTGAGATTCAGAAGACCAAAAGAC
TTTGGTGTTTTGTAAAAAGTAGAAGGTACTCGTCCTGTACCTACTTTAGATAAGACTAAA
CTTAAGATTGTTTAAACATAAGTAGAAAATACTTACAATAAGGTAAAAATTAATTGCTTG
CTAAAAAACTAATTATTTTTTTAATTTTAAATAGCTTTAAATTATGAATTTGCCTGAAAA
TTTCAGCGAAGAGCATGTTATGCAACTATTATTAACTTATGGGTATGATTAGATCAATTA
TTTATTATTTATTAATGAATTATATAAAATAGAGATCTAAAATCATTCCATTTGGCAGTT
GATAAGATTACTAGTGAATCGAAGGGTTTTGCATTTTGTGAATTTATCACTGACAGATCA
ACTGTAGAATGCTTGAATAAATTAAGTGGTTAATAGATATGTAATTCTTTTTTATTAAAA
ATTTTCTTTGTAAATAAGTGAATTAAATTTTTGAAATTAGTGAATAAAGTCATAAATGTC
AAAAGATGTAATCCTTAACTTGCACCACAACATGAAGAACCGATTCTTTCACTTGACTAG
TTATACAAAAATTTAGTTGAAAACGTTAATAAGACAATCATTGAATCTGGCTAAAAGGAT
ATCTAAGAAGATTATTTAAAGAAAATGCTATCAATAAATGCTCCTAAATATGACGGGTTG
ATTACAGAAGATGCAACAAATGTGTTAAAGTTGCATAATATTGTCAATAAGCAATTAATA
GAGGAAGATGCGGAGTATCATTTTATTTTTAATGATTTGAAGACATAGCTCGATAGAATA
GGAAGAACAAAATAAATTATAATTCCTAGAAAGAAAGACAAGTTCTTAGAAGGAATCGGA
TTTGTTTTTGTAGAATTTGATAATGAAAGAACAAGCTAAATTGCAAGCTTTTTACTTTAG
GTTTAACATTTTTAATTTAGTTTTATTTTATATTTAACTGGCTAATTGTTATTAAATATA
GAAAATCAAGTACGATGGTAAAGATGTTAAAGCAGAGTTTTACAGTCCTTAATATTTTGC
AGATAGAACATTCTATTGA


>TTHERM_00151210(protein)
MDRKQNKKEYKRSRSRSEKKRKKEKKRKNKDKKKKDKHSKKSDRRYSESRSSSESSRSSR
SNSPNQQGGNDDNKIKIIPLSFPSSGKPQQEITTPTSAQGASTSSAIPSTILQIVNKAQQ
NVQAAVASNTNPLREKRNAFSSPPKNTGSNGFGAPVSAGGLEIPGLGGINIGSAGTSGFD
IGIPGLGGLGGFGLPQDTQIIGNKIPPALQKQYIHALRVYIGNIPDPVDVEDVCKFVFEQ
MANAGGLLEPGNPIQSKKHDPIKKFIFLQLRSIEETSACMELDGIIYKGKSLRFRRPKDF
GVLQKVEGTRPVPTLDKTKLKIVQTQVENTYNKLQIMNLPENFSEEHVMQLLLTYGDLKS
FHLAVDKITSESKGFAFCEFITDRSTVECLNKLSGQQILNKVINVKRCNPQLAPQHEEPI
LSLDQLYKNLVENVNKTIIESGQKDIQEDYLKKMLSINAPKYDGLITEDATNVLKLHNIV
NKQLIEEDAEYHFIFNDLKTQLDRIGRTKQIIIPRKKDKFLEGIGFVFVEFDNERTSQIA
SFLLQKIKYDGKDVKAEFYSPQYFADRTFY