Identifiers and Description

Gene Model Identifier

TTHERM_00161180

Standard Name

RFC5 (Replication factor C 5)

Aliases

PreTt28510 | 13.m00538 | 3829.m01331

Description

RFC5 replication factor C activator 1; Subunit of Replication factor C (RF-C)- which acts as a clamp loader of the proliferating cell nuclear antigen (PCNA)

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00004 ) ATPase family associated with various cellular activities (AAA)
• ( PF01814 ) Hemerythrin HHE cation binding domain
• ( PF07728 ) AAA domain (dynein-related subfamily)
• ( TIGR00678 ) DNA polymerase III, delta' subunit

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_05372.1	9.997093137033517e-262
	Description: replication factor C subunit (359 aa)
Tetrahymena borealis	EI9_08488.1	9.997093137033517e-262
	Description: hypothetical protein (240 aa)
DictyBase	DDB_G0293702	3.0014466598835893e-101
	Description: rfc3 on chromosome: 6 position 3014705 to 3015924
Oxytricha	Contig1144.0.g118	3.9985196551577655e-99
	Description: Replication factor C C-terminal domain
SGD	YBR087W	2.9986068920536807e-84
	Description: RFC5 Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon
WormBase	WBGene00004339	9.996373193201036e-79
	Description: locus:rfc-3 status:Confirmed UniProt:Q18547 protein_id:CAA94339.1
Stentor Coeruleus	SteCoe_34117	2.7487850079102147e-43
	Description: None

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00161180(coding)
ATGTTACGCGGTTAATTCCAAAAAATATAAATAATTAGAATTATACTTCTTAAAATCTAA
GTTTTGAAAGCTAGAGACAGGCAAACAGAAAGATATATAAATATTAGCTATTCAAAATTT
TTTGCAAAAAAATAATTTATTTCAATCAGTACAAAACAGTTTAAAAAAAGGTTTATCAAT
AAAAAGATATTATAAATGGAAAAGCTTTGGGTAGACGAAATTAGACCAAAATCACTTGAT
AAGTTAGATTATCATCCTTTGTTAACTGAAAAATTATAAAAGCTAGCTCATTCTGAAGAT
TTCCCTCATTTGTTATTATATGGACCTAATGGTGCAGGTAAAAAAACAAGAGCTATGGCT
TTCTTGCAAGAAGTTTATGGAAATGGTGTGCATAAAGTCAAATCTGAAGAAAGAGAATTT
AAAGTTAATCCAAATACAAGCACTACAGTTGAAGTTAATATAATTTCATCTAATTATCAT
TTAGATGTCACACCTGCTGATGCAGAGAATTAAGATAGAGCAGTCATTTAGAAGTTGATT
AAAGAAGTTGCTTCAACACATTAGTTAGATCCAAATTCTCAAAGACGTTTTAAAGTTATT
ATTATAAACGAAGTAGATCGTCTTACTCTTGAAGCTTAAGCCTCTCTAAGAAGAACTATG
GAAAAATATATTGGCAGATGCAGATTAATTTTGATAGCTGAAAATATTGGAAGAGTTATT
TTACCACTTAGAAGTAGATGCCTATTAATTAGAGTTGCTGCACCCTCAGAGCAAGATGTT
AAAGCTGTTGTTAGAAAGCTTAATAATGAAAAGAATTTAAATATACCTGATGATCTAGCT
TGCAAATTCGCAAAATCATGTGATTATAATTTAAGAGCAGTCATTTTAAATTTGCAAACA
CAAAAGCTACTCAAAAGTACTTACAACAATTCTATGGAGGTATAAGAGCCTGAATGGAAG
AAAGAAATTAAAAATATCGCAGGAATTATCAAAGAGCATTAAAATCCAGCAAAGTTAAAA
GAAATTAGAAGTAAATTTTATGACTTATTGGTAAATTGCATACCAGGAGATATAATTATA
AAGAATTTGATGTACAGTCTTCTTGATTTAATTGACCAAAATGATGTACATACTAAATAA
GAAATCATATACTATGCTGCTCACCATGAGAATTTGATGAATATGGGATCAAAGCCTGTC
TTCCACTTAGAAGCATTTGCTGCATAGTGCATGCTAAGCTACAAGAAATCTATATTAAAA
TTAAAAGATTGA

>TTHERM_00161180(gene)
ATGTTACGCGGTTAATTCCAAAAAATATAAATAATTAGAATTATACTTCTTAAAATCTAA
GTTTTGAAAGCTAGAGACAGGCAAACAGAAAGATATATAAATATTAGCTATTCAAAATTT
TTTGCAAAAAAATAATTTATTTCAATCAGTACAAAACAGTTTAAAAAAAGGTTTATCAAT
AAAAAGATATTATAAATGGAAAAGCTTTGGGTAGACGAAATTAGACCAAAATCACTTGAT
AAGTTAGATTATCATCCTTTGTTAACTGAAAAATTATAAAAGCTAGCTCATTCTGAAGAT
TTCCCTCATTTGTTATTATATGGACCTAATGGTGCAGGTAAAAAAACAAGAGCTATGGCT
TTCTTGCAAGAAGTTTATGGAAATGGTGTGCATAAAGTCAAATCTGAAGAAAGAGAATTT
AAAGTTAATCCAAATACAAGCACTACAGTTGAAGTTAATATAATTTCATCTAATTATCAT
TTAGATGTCACACCTGCTGATGCAGAGAATTAAGATAGAGCAGTCATTTAGAAGTTGATT
AAAGAAGTTGCTTCAACACATTAGTTAGATCCAAATTCTCAAAGACGTTTTAAAGTTATT
ATTATAAACGAAGTAGATCGTCTTACTCTTGAAGCTTAAGCCTCTCTAAGAAGAACTATG
GAAAAATATATTGGCAGATGCAGGTAAAATAATATACCAATCATTATTTAAAAATGAAAT
TTTCTAAAATATTTTGCACAATACAAAAACTCAAACAAAAAAATTCAATCCTAAAAATCT
AAAAAGAATAATTTTATTTTTCATTTCCTAAAATTTATTTTATTAAAATTATTTATTTTA
TAACTAAATAAATCCTAAAACAAATTTCTTTATTGACATAAAAGTAATTACAAATATTTT
GATCAGAAAAGTAGAAATACAAAATATTAAACAAATTAGATATCTATCTTAAAATAATTC
CCATTATATAATACTTAGCATAATAAATATTTTATAAAGTCAATCAAAAACTTAGATGAG
ATTTCTAAATAAAATAAAATTAGATATTCTATGAAGTCAATAATAATGATATCAACAAAT
AATATAAATAGAAGTATAAATAATTATCTGAATTACTATTTGATTTGTATAAAATTAAAA
AGAAACTAGATTAAAAAAATAATTTTTTAATTTTCAAGTTTTGAGAGTTATGATAAAAAT
AAAAGGTTATTTGTTTTAGATAAAAGTAAAATAAATCCTAAATCAAATAACTTTATTAAC
ACAAAAATACTAGCAAATATTTTGATCAGAAAAGTAGAAATAAAAAATATTAAAAAACAT
TTAAATTAGATATTTTATAGTCATCCCATTATGTCATTTTGAGAATAATAAAGATATTTT
AAAGTCAACAAAAACTTAGCTGAGATTTATAAACTAAATTTATTTGGATATTTTAAATTT
GTAAATAATAATAGATATCGAGAAAAACAATAAATAGAAGTTTAAAATAATTATCTGAGT
TATTATTAGCTACATAAAAAATAGTGATAAAAATATTAAGAAGTTAAATATTTTTTTAAA
TAATTTTGAAGAGTTATCATAATTATATAAAGATATAACCCCTTGTTTTTGAACAATAAA
TAAAATAACATAGAAAATATAATTTAGATTATTTATCAAATTAAAAATCAATTTTTTATG
AGTCCTAAAACATAAATCTATAATTCAATAATAATTCAATCAATTCAAATCAAAAAATAT
TATTTTTAATAATAAATTCAATGATAATTATAATTTAAAAAGATAATTTTTTTTTATAAA
ATATTTTATGAGCAATTATTTGATAGTTTTAAGCAAAAATATAATTTATCTTTTTGATTC
ATAAAACAATTATTTGAGTAAAATAAAATTGCATAATTGTTCTTTTTTATATAGGATTTT
TTTCTATAACAAATTTTAATCAGATATTTTCTATAACTTACAAATTCTAAATAAAATTAA
TACTTTTACACTGAATTTAAAACAAGTAACTTATCAATTTTTTATAATATTGATTAATTT
ACAGTTTAAAATGTAAGAGTAAATAACTAACGTGCGATTACTTACTTAATTAATGTATTG
ATTTTTTATATATAGATTAATTTTGATAGCTGAAAATATTGGAAGAGTTATTTTACCACT
TAGAAGTAGATGCCTATTAATTAGAGTTGCTGCACCCTCAGAGCAAGATGTTAAAGCTGT
TGTTAGAAAGCTTAATAATGAAAAGAATTTAAATATACCTGATGATCTAGCTTGCAAATT
CGCAAAATCATGTGATTATAATTTAAGAGCAGTCATTTTAAATTTGCAAACACAAAAGCT
ACTCAAAAGTACTTACAACAATTCTATGGAGGTATAAGAGCCTGAATGGAAGAAAGAAAT
TAAAAATATCGCAGGAATTATCAAAGAGCATTAAAATCCAGCAAAGTAATTTCATCATAT
CTATTAATATAATTTCTAGTTTTAAACAAACACAAAGTTTCAATTCATATTTTATTAAGA
AAGAAACTTATTTGCTAAAATATTTCCATAAAATAAATATTTTGATCATTTAATTTTAAT
CGGAATCATAAAAAATATTTCGTATTAAGTATTCTTCAAAAAAGTAACAGATATATTTTT
AGAGAAACCTTAAACCTTTAGATATTAGACCATTATTAGATAAATTGATTGAGCTATTTA
ATTTAATTCGATAAAGTTAATGAATTACATAGATTAATTCAATCTTTGTTTGATCAAAAT
AAAATTTTGCTTATTATCAACACATAGTTAGTTATTTTATTATCAACATCAGCCAATATA
TATTGATCAATTTTTAATCATCTTAACTTAATTTCAAACTTGAAAAACACTAAATCAAAA
ATTTTTATTGTTCACTCATTCAATCACTCTCATACACATTTACTGTTGAAATGTAATATT
TAATTTAAAGCAAGACGTCAGAGTAAATAAAATTTGATCAAGCTTAACTTACTTTTGATT
TAAAAAAATAAAATATTGACACTTTTTATATGAGTTTTATCTAAATAAATTAGGTTAAAA
GAAATTAGAAGTAAATTTTATGACTTATTGGTAAATTGCATACCAGGAGATATAATTATA
AAGAATTTGATGTACAGTCTTCTTGATTTAATTGACCAAAATGATGTACATACTAAATAA
GAAATCATATACTATGCTGCTCACCATGAGAATTTGATGAATATGGGATCAAAGCCTGTC
TTCCACTTAGAAGCATTTGCTGCATAGTGCATGCTAAGCTACAAGAAATCTATATTAAAA
TTAAAAGATTGA

>TTHERM_00161180(protein)
MLRGQFQKIQIIRIILLKIQVLKARDRQTERYINISYSKFFAKKQFISISTKQFKKRFIN
KKILQMEKLWVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMA
FLQEVYGNGVHKVKSEEREFKVNPNTSTTVEVNIISSNYHLDVTPADAENQDRAVIQKLI
KEVASTHQLDPNSQRRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVI
LPLRSRCLLIRVAAPSEQDVKAVVRKLNNEKNLNIPDDLACKFAKSCDYNLRAVILNLQT
QKLLKSTYNNSMEVQEPEWKKEIKNIAGIIKEHQNPAKLKEIRSKFYDLLVNCIPGDIII
KNLMYSLLDLIDQNDVHTKQEIIYYAAHHENLMNMGSKPVFHLEAFAAQCMLSYKKSILK
LKD