Identifiers and Description

Gene Model Identifier

TTHERM_00188280

Standard Name

RAB39 (RAB GTPase 39)

Aliases

PreTt08578 | 15.m00289 | 3697.m00001

Description

RAB39 Ras family small GTPase; Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Cellular Component

• intracellular anatomical structure (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase-mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00009 ) Elongation factor Tu GTP binding domain
• ( PF00025 ) ADP-ribosylation factor family
• ( PF00071 ) Ras family
• ( PF00350 ) Dynamin family
• ( PF01926 ) 50S ribosome-binding GTPase
• ( PF04548 ) AIG1 family
• ( PF08477 ) Ras of Complex, Roc, domain of DAPkinase
• ( TIGR00231 ) small GTP-binding protein domain

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_06367.1	4.0002634815779907e-110
	Description: Ras family protein (224 aa)
DictyBase	DDB_G0276399	3.0007793728221555e-22
	Description: rab8B on chromosome: 2 position 6878753 to 6879364
Oxytricha	Contig7494.0.g64	8.002082816694397e-20
	Description: Ras family
SGD	YFL038C	1.9999391735788327e-19
	Description: YPT1 Rab family GTPase, involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p)
WormBase	WBGene00004273	4.998394530072393e-19
	Description: locus:rab-10 status:Confirmed UniProt:Q94148 protein_id:CCD70773.1
WormBase	WBGene00006940	4.998394530072393e-19
	Description: locus:wee-1.3 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 status:Confirmed UniProt:O18209 protein_id:CAB16484.1

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00188280(coding)
ATGAATAAAAGCATTTCATTAACTAGTAAAAAGCACTACAGTATTTTGTTGATAGGAGGT
ACTGGTGTAGGTAAATCATGCCTGAAAAATCGTATAATAAGAAAAAAATTTTAAACTGAA
ATAAGTACAGTAGGTGTAAATTAGCAACATTTAGACTACACTTATAAAAATAAGCAAATT
AAGCTGATGATTACTGATACTGCAGGATAGGAGTAATTTAAATCTATTACCAAATCATAT
TATAAAGATTGTTTTGCAGTCTTATTCTGTTTTTCGGGAGACTCACCTAGAAGCTTGAAA
GAAGCTGAACATTATGCAAGACAATTTTAAGTAAATTACTAAAATAGCAAGGCTCCTGAA
GGTTTTGCACCAATTTGCTTGTTCGTAAGAAACAAATGTGATATGTCTGAAAATATTTTC
ACTTAGAATGTTATAGATAACACTATAAATGGAATTTCAGAGTTGTATTAGGAATTCAAA
GGTTTCTAAAACATTAAGTTTTTTGAAGTAAGCGCTAAAGAAGGAACTAATACAGAAAGC
TTACTTTAGTATGTTGTTGAAGAACTAGACAAATAAAATGTATTCGATATAAAGGAATAG
AATGGAACTGTTATTCTCAATTAGAATTAGGATAAAAACTAGGAAAAAAATAATGAATCA
TCATCTTCTGGTTGTTGTAAATGA

>TTHERM_00188280(gene)
ATGAATAAAAGCATTTCATTAACTAGTAAAAAGCACTACAGTATTTTGTTGATAGGAGGT
ACTGGTGTAGGTAAATCATGCCTGAAAAATCGTATAATAAGAAAAAAATTTTAAACTGAA
ATAAGTACAGTAGGTATTACACATTTATAATTAATTAGCTATTAATTTTAGTTTTCTAAT
TATATCATTTTAAATGAACTAAAAAAGGTGTAAATTAGCAACATTTAGACTACACTTATA
AAAATAAGCAAATTAAGCTGATGATTACTGATACTGCAGGATAGGAGTAATTTAAATCTA
TTACCAAATCATATTATAAAGATTGTTTTGCAGTCTTATTCTGTTTTTCGGGAGACTCAC
CTAGAAGCTTGAAAGAAGCTGAACATTATGCAAGACAATTTTAAGTAAATTACTAAAATA
GCAAGGCTCCTGAAGGTTTTGCACCAATTTGCTTGTTCGTAAGAAACAAATGTGATATGT
CTGAAAATATTTTCACTTAGAATGTTATAGATAACACTATAAATGGAATTTCAGAGTTGT
ATTAGGAATTCAAAGGTTTCTAAAACATTAAGTTTTTTGAAGTAAGCGCTAAAGAAGGAA
CTAATACAGAAAGCTTACTTTAGTATGTTGTTGAAGAACTAGACAAATAAAATGTATTCG
ATATAAAGGAATAGAATGGAACTGTTATTCTCAATTAGAATTAGGATAAAAACTAGGAAA
AAAATAATGAATCATCATCTTCTGGTTGTTGTAAATGA

>TTHERM_00188280(protein)
MNKSISLTSKKHYSILLIGGTGVGKSCLKNRIIRKKFQTEISTVGVNQQHLDYTYKNKQI
KLMITDTAGQEQFKSITKSYYKDCFAVLFCFSGDSPRSLKEAEHYARQFQVNYQNSKAPE
GFAPICLFVRNKCDMSENIFTQNVIDNTINGISELYQEFKGFQNIKFFEVSAKEGTNTES
LLQYVVEELDKQNVFDIKEQNGTVILNQNQDKNQEKNNESSSSGCCK