Identifiers and Description

Gene Model Identifier

TTHERM_00219250

Standard Name

RRM5 (RNA recognition motif-containing protein 5)

Aliases

PreTt22353 | 18.m00379 | 3701.m00138

Description

RRM5 RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Molecular Function

• nucleic acid binding (IEA) | GO:0003676
• zinc ion binding (IEA) | GO:0008270

Domains

• ( PF00076 ) RNA recognition motif
• ( PF00098 ) Zinc knuckle
• ( PF08777 ) RNA binding motif

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_06705.1	7.999776857243347e-93
	Description: hypothetical protein (259 aa)
WormBase	WBGene00009367	7.999776857243347e-93
	Description: Acidic leucine-rich nuclear phosphoprotein 32-related protein 1 status:Confirmed UniProt:O62220 protein_id:CAB04265.1
Oxytricha	Contig4371.0.g71	2.998800627344286e-26
	Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
Stentor Coeruleus	SteCoe_13793	7.781132241133797e-20
	Description: None
WormBase	WBGene00004698	0.00000000000040012475857291343
	Description: locus:rsp-1 Probable splicing factor, arginine/serine-rich 1 status:Confirmed UniProt:Q23121 protein_id:CAA91395.1
DictyBase	DDB_G0280393	0.0000000000010000211161514907
	Description: DDB_G0280393 on chromosome: 3 position 3254509 to 3256772
SGD	YHR086W	0.00000030014504373857585
	Description: NAM8 RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00219250(coding)
ATGAGTAGTAGCAGTAGGAGATCAGGTTCAAATACAATTTTTGTTGGAAAATTATCTTCT
AGAGTTAGAGAAGAAGACCTCAGAGATGAGTTCAGAAGATACGGAAGAATTAGAGATATA
GATTTTAGAAGATAAAGGGGTTTTGCTTTTATTGAATATAGCAGCTCCTCTGATGCAAAA
TAAGCCGTAGAAGACATGGATGGATAGCGCTTCGAAGACACCCGTATAGTTGTTTAGTAC
AAAGAAAATAGAAGTGATCGCAACAGAAGAGGACCATCAACAGCTGATGTTTGTTACAAT
TGTGGAAGAAAAGGACATTGGGCTAATGAATGTAAGGAAGGAAATTGGAATAACAGATGT
TATAGATGCGGAAAAAGTGGACATTTAAAAAAAGAATGCTCTTTGAGCAGAACTCCTTCA
TCAAGAAGAGAATCTCCAAGACGTTCAAGAAGAAACAGAAGCTAGAGTGGAAGTAAAAGT
AAGAGTGTTAGTGACAGCAGAAGCAGAAGTAGATCTAAAGATAAAAATAGAGATAAAAAG
AGAAGATAATCTTACTCAAAATCTTCCTCTCGTTCTAAAAGTTCAAGATCAAGATCATCA
AGAAGAAGTTATTCAAGCTCCAAGTCAAGAGCATCTTCATCAAGATCAAAGTCCAGATCA
TCAAATTCTTCCAAAGAAAATAACAAGAATCAAAGAAAGAGCATGAGTGAGTCAAGAAGT
AGAAGAAATTCTAACAATAATAGAAGCTCTTCTCCTCCTAAATAAAACTGA

>TTHERM_00219250(gene)
ATGAGTAGTAGCAGTAGGAGATCAGGTTCAAATACAATTTTTGTTGGAAAATTATCTTCT
AGAGTTAGAGAAGAAGACCTCAGAGATGAGTTCAGAAGATACGGAAGAATTAGAGATATA
GATTTTAGAAGATAAAGGGGTTTTGCTTTTATTGAATATAGCAGCTCCTCTGATGCAAAA
TAAGCCGTAGAAGACATGGATGGATAGCGCTTCGAAGACACCCGTATAGTTGTTTAGTAC
AAAGGTAAATAAGCAAAATTTGTTTTTTAAAAACTAATTTTATAACATTTTAGGATAAAA
TAAATATAAAAAGCTAAAATCTATTTACAAATAATAAAATTTTATAATTAAATAAATATT
TTAAAATTTATAATTAGAAAATAGAAGTGATCGCAACAGAAGAGGACCATCAACAGCTGA
TGTTTGTTACAATTGTGGAAGAAAAGGACATTGGTAAATCATATTTTACATTTATTTTAA
ATTATAAAAAAAGCAAACGAGGAGTATTTAAAAATATCAAAAAGTATTATTACTGCACGT
ATCATTCATTCATTTTAATGATAAATCGAACATTTAATTTTAGTAAAAAAATCAAAAAAC
TCCTCTTTAAGCATCATCATTTAGAACTTAAATATAATAATACCTAATATTTTTATAGTA
TCATCTAATATAAGCATAAATAATGGAAATAAATATTGATAAACATACATGATTTTACTA
AAATAACAAATTTTATATTTTAACTTTCCCCAAATATACTAACTAAGATCTAAAAAACAA
TTTAATTTTTCATTTATAATCTTGGATTAGTTTAGATGGTGGAATTAGTTTTTGTATGGA
GTAGCAAAAATTGAGTTTTACCATGAAGAATTTTTCAGATTTAAAATCACAATAATGTCA
AAGTAAAGGCTAGAAGATTAATTCAATCATTAGAAGAGCTTCTTGCATTCATTCCTTTCT
TCTTTTGTTGATTTATTTGAGAACTAAATTTACAAAATCCAAAAAATTTGCTTGACAATT
TTTAAATTTGGAAGAAGCAAAAGATAGATAAATAAATAAATGTTGGTTGTTTATTATATG
AATAAATAAATAATTAATTAATTTACTCGATAAAAAACTTCCAGAAGAATGAGAAGAATG
CATCGAAGAAAATGAACGAAAACGAAGATATGAAAAGTAGTAAAAAGATAAGATATTATT
AATTTTTAATTGTTTCGAATACTGAAAAATATAAATTAAATAAAGAATTGATGATTAAAT
ATGGTGATTGATGAAAATCAAGAAGAATCAATGAAGTCGAAGAAGAAGAAATTTAAATAC
CACAATTCGAGTTCTACAATAATTTAAAGCCATATATATTGTTTGTTGATTCAAAAAAGA
AGAATATATCAGTTGAATTTGGAATTTCTTACTTTTGTTTTTCTTATGTTTCTCAAACAA
GATTTTTATTAAACCAAGTATTAAGTTTAAGTGATTAAGTTTGAAGAGGGTGAGGAAGAT
ATTGATGATTATTTTGATGATAGTTTTGATGATGATGATAGTAATGATGATGAATCAAAA
GATGAAGACGATTAAAATTAATGTAATTTAAGATTGTCCATCAAAAGCAAAAATAAATAA
ATAAATAAAATTAATTACAAATAAATGGTTTTAAAATATTTTATAAGAGCAAACAAAGAA
AATAAAAATGAGCTATTAGATTTAATTTTATATAAAAATCAAAGCTAATTAGATATAAAT
TAAGTATTCCTCAATATAAATCATTAAAATATCATTAAATATTAAATAAAATTTTAATAA
TATATAACAATTAGGGCTAATGAATGTAAGGAAGGAAATTGGAAGTAATTTATTTATTTA
TTATTTTATTTTAATCATATTTAATTAAATTTATTTAAATTTAATAGTAACAGATGTTAT
AGATGCGGAAAAAGTGGACATTTAAAAAAAGAATGCTCTTTGAGCAGAACTCCTTCATCA
AGAAGAGAATCTCCAAGACGTTCAAGAAGAAACAGAAGCTAGAGTGGAAGTAAAAGTAAG
AGTGTTAGTGACAGCAGAAGCAGAAGTAGATCTAAAGATAAAAATAGAGATAAAAAGAGA
AGATAATCTTACTCAAAATCTTCCTCTCGTTCTAAAAGTTCAAGATCAAGATCATCAAGA
AGAAGTTATTCAAGCTCCAAGTCAAGAGCATCTTCATCAAGATCAAAGTATATTTAAAAA
ATTATATTCTTTTAGTAATTTATTTTTTTTATCAAAATAGGTCCAGATCATCAAATTCTT
CCAAAGAAAATAACAAGAATCAAAGAAAGAGCATGAGTGAGTCAAGAAGTAGAAGAAATT
CTAACAATAATAGAAGCTCTTCTCCTCCTAAATAAAACTGA

>TTHERM_00219250(protein)
MSSSSRRSGSNTIFVGKLSSRVREEDLRDEFRRYGRIRDIDFRRQRGFAFIEYSSSSDAK
QAVEDMDGQRFEDTRIVVQYKENRSDRNRRGPSTADVCYNCGRKGHWANECKEGNWNNRC
YRCGKSGHLKKECSLSRTPSSRRESPRRSRRNRSQSGSKSKSVSDSRSRSRSKDKNRDKK
RRQSYSKSSSRSKSSRSRSSRRSYSSSKSRASSSRSKSRSSNSSKENNKNQRKSMSESRS
RRNSNNNRSSSPPKQN