Identifiers and Description

Gene Model Identifier

TTHERM_00241840

Standard Name

SAF5 (SWI/SNF-associated factor 5)

Aliases

PreTt18922 | 20.m00386 | 3706.m00150

Description

PHD-finger protein; PHD-finger containing protein. Member of the SWI/SNF complex.

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Molecular Function

• protein binding (IEA) | GO:0005515
• zinc ion binding (IEA) | GO:0008270

Biological Process

• regulation of DNA-templated transcription (IEA) | GO:0006355

Domains

• ( PF00130 ) Phorbol esters/diacylglycerol binding domain (C1 domain)
• ( PF00628 ) PHD-finger
• ( PF03107 ) C1 domain
• ( PF08792 ) A2L zinc ribbon domain

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_07810.1	1.0003491030231826e-151
	Description: PHD-finger family protein (601 aa)
WormBase	WBGene00003058	1.0003491030231826e-151
	Description: locus:lov-1 Location of vulva defective 1 status:Partially_confirmed UniProt:Q09624 protein_id:CAB70192.3
Oxytricha	Contig14802.0.g27	1.0002335610448659e-38
	Description: PHD-finger
WormBase	WBGene00011729	2.000769134519826e-18
	Description: locus:set-16 status:Partially_confirmed UniProt:G5EGI1 protein_id:CAB03348.3
WormBase	WBGene00006697	2.000769134519826e-18
	Description: locus:uaf-1 status:Confirmed UniProt:Q8MXS2 protein_id:CCD62281.1
DictyBase	DDB_G0272064	0.00000000009998509410508463
	Description: DDB_G0272064 on chromosome: 2 position 1150556 to 1158821
SGD	YJR119C	0.000000019990673443141236
	Description: JHD2 JmjC domain family histone demethylase specific for H3-K4 (histone H3 Lys4); removes methyl groups specifically added by Set1p methyltransferase; protein levels regulated by Not4p (E3 ubiquitin ligase) polyubiquitin-mediated degradation

General Information

No Data fetched for General Information

Associated Literature

1. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences

>TTHERM_00241840(coding)
ATGTAGAAACTCTTAAAATATATCTGCTTATTTATTGTAAACTATTAACTTTCATCTTTT
ATTACTAATAATTTTCTACATTTTCTGTCGCTATATAAAAATTTATTAAATAAAAAGCAA
AGCGAGCGCAGGTTAAGAAATTTAAATAATAAATTCTTAATTTAATTAGATCAAATAAAC
ATATATTTATTATTTTTAGTTAGTTTTCTTTTAGAAAGAAAGAAATTTTTTACGCACGTT
GATTAAATGTTGAATAAATTTGTTCTGGATAAACAAACAGATAGAAATTTCAGTCCGTTT
GATAAATACATTTTTGAGTAATTGCATTTAAATTCTAATAAAATTAATCCCTTTCACACA
GATTGCAAATTTACAAAGAGAAGAGTATGCTATTGCAACTATCATAATAGCTCTTTAATA
GAGCAAAGATCATAAGAGTTAAACGAAGCAGTAAATAGATATTTAAAGGTTGACTATAGT
GGAGCTACAAAGCAAGATTTAAAGAGGTCACTCATAAATAGATAGCTCGCTTAAGAAAAA
GTTAAAAGGTTATAGGATTTAGAAGATTTATTTTACATGGCACCAAAATATGAAAAGTAC
GTTGAAGCTTAAAAAGAAGAGGAAAATGCAATCTTAAGAGAATAAATCATTTAGGAATAA
AAGAACATGATCATTAATGGGCAGTGCTACTATTGTCAAACTACTCATTCAAATAAATTT
TATGAGATAAGTCCTAATCCTGCTGAGACTGTCGTTATCTGTGAAGAATGCGCAATTTCT
AATCATCCTGAAGTAGTTACTTACAATAACAAGCCTGCTTAAAAGCCTGAAAATCTTATC
GAAAAGAAAAAAAAGAGGCAAGAAGCTCAAGCTAAAAGATTACAAACTCTTCAAGCAAAG
AAATTACTCAAAATGGGTACCTTGGATTAAAATTCTAATAAGCAAAATAAATAAGGAAAT
GAAAAAAGCACAACAAAGCTTGACAAAGAAGATGACGAAGATGAAAGTGACATTTCAGAA
ACTTAAAAAGAATGCAATTGGGAAAAATGCAAAAAGAAAAATAAAAGTGATCCTGAAGAC
ATTCTTGTTTGCAAAAATTGCAACAAGAGCTTTCATGCTGAGTGCTGCGATCCTCCTCTT
GAAAAGGGAATAGTTTCAAAGTACGATTGGTTTTGTACAGAATGCAAGCTATGTATTGCT
TGTAACAAAAACACTAAAGAAAATGAATTGCTTATGTGCGACTGTTGTGATAGACCATTC
CACATGAGCTGTTTGGAACCAGCAAGAACTGATATTCCAGAAGGTAGATGGTTTTGTAAA
GATTGTGAAAAATGTCCATGCTGTGGAGTTCTCTTATTCTAAAATTATTCAAGAGAACTG
CTTAAGTAGTATTCAAAATAATAAGTGGATAATAAAATAATATGTAAAGATTGTTGGGTA
TACTACCAATAAAAAAAATACTGTCCTATTTGCTTCAAAATAATAGAAGAAAATGCGGAA
GGCTAGTTTGTGTATTGTGATAAATGTGAATTATGGCTACATTACGAGTGTGAAAAGAAG
CTTAGCAACAGATCCTTTAGAGAAATTAACAGATCAAAATAGTTTTGTTGTAGTAAATGT
AAGGTTATTGAAGACAGTAAGTAAAAATGA

>TTHERM_00241840(gene)
ATGTAGAAACTCTTAAAATATATCTGCTTATTTATTGTAAACTATTAACTTTCATCTTTT
ATTACTAATAATTTTCTACATTTTCTGTCGCTATATAAAAATTTATTAAATAAAAAGCAA
AGCGAGCGCAGGTTAAGAAATTTAAATAATAAATTCTTAATTTAATTAGATCAAATAAAC
ATATATTTATTATTTTTAGTTAGTTTTCTTTTAGAAAGAAAGAAGTAAAAAAGCTTGTTT
TAAATTAGTTTATCAAATTAATAAAAAATAGATTTTTTACGCACGTTGATTAAATGTTGA
ATAAATTTGTTCTGGATAAACAAACAGATAGAAATTTCAGTCCGTTTGATAAATACATTT
TTGAGTAATTGCATTTAAATTCTAATAAAATTAATCCCTTTCACACAGGTAATTTGAGAA
ATAATATCATTTTAAGATATAAAGAGGTGACTTTTGGTAATAAATTCTATTTTTTTAACA
AGATTGCAAATTTACAAAGAGAAGAGTATGCTATTGCAACTATCATAATAGCTCTTTAAT
AGAGCAAAGAGTAAGAATGAAATTTATTACTAAATAAATATTTAAAAAATGTATTTTACT
ATCTATTAATAGTCATAAGAGTTAAACGAAGCAGTAAATAGATATTTAAAGGTTGACTAT
AGTGGAGCTACAAAGCAAGATTTAAAGAGGTCACTCATAAATGTATTATTATTTCTATAG
ATGCAATAAATATAACTAGATTTATAATATTAGAGATAGCTCGCTTAAGAAAAAGTTAAA
AGGTTATAGGATTTAGAAGATTTATTTTACATGGCACCAAAATATGAAAAGTACGTTGAA
GCTTAAAAAGAAGAGGAAAATGCAATCTTAAGAGAATAAATCATTTAGGAATAAAAGAAC
ATGATCATTAATGGGCAGTGCTACTATTGTCAAACTACTCATTCAAATAAATTTTATGAG
ATAAGTCCTGTAATATTTTTTAGATCCTTTAATGAAATAAATATTTAGTTTGGCGGAACA
AAATGCTTGATAAAAATAGATAGAATTTAATAATGAATGTTTTAATTAGAATTTTAATTT
ATAAAATGATTAAATAACAATTTGAAATGCATATCTTTTTAATTAAAATACTGATAGAAT
CCTGCTGAGACTGTCGTTATCTGTGAAGAATGCGCAATTTCTAATCATCCTGAAGTAGTT
ACTTACAATAAGTAATTTATATCAAATATATTTATTAAACTGTCTCACTCTTCTCAATAT
TTTTTTATTATAATTTTAGCAAGCCTGCTTAAAAGCCTGAAAATCTTATCGAAAAGAAAA
AAAAGAGGCAAGAAGCTCAAGCTAAAAGATTACAAACTCTTCAAGCAAAGAAATTACTCA
AAATGGGTACCTTGGATTAAAATTCTAATAAGCAAAATAAATAAGGAAATGAAAAAGTAA
TTAATTAATTTTCCATATTTAGCAAATCAGTATATAAATTAAATATATTTTTAGAGCACA
ACAAAGCTTGACAAAGAAGATGACGAAGATGAAAGTGACATTTCAGAAACTTAAAAAGAA
TGCAATTGGGAAAAATGCAAAAAGAAAAATAAAAGTGATCCTGAAGACATTCTTGTTTGC
AAAAATTGCAACAAGAGCTTTCATGCTGAGTGCTGCGATCCTCCTCTTGAAAAGGGAATA
GTTTCAAAGTACGATTGGTTTTGTACAGAATGCAAGCTATGTATTGCTTGTAACAAAAAC
ACTAAAGTAAATGAAAATAAATTTAATATTCACTTATTTATTTAATTTTGTTAAGATTGA
TTCAAATTATTTTAATCACATTAAGCAAGCAAATTTAAATTTCCCCAAAAAATATTTTAG
GAAAATGAATTGCTTATGTGCGACTGTTGTGATAGACCATTCCACATGAGCTGTTTGGAA
CCAGCAAGAACTGATATTCCAGAAGGTAGATGGTTTTGTAAAGATTGTGAAAAATGTCCA
TGCTGTGGAGTTCTCTTATTCTAAAATTATTCAAGAGAACTGCTTAAGTAGTATTCAAAA
TAATAAGTGGATAATAAAATAATATGTAAAGATTGTTGGGTATACTACCAATAAGTAATT
CTTTAAATAAAATTTTCAAAAAATTATCTTTATTTACCCAAATATAAATAGAAAAAATAC
TGTCCTATTTGCTTCAAAATAATAGAAGAAAATGCGGAAGGCTAGTTTGTGTATTGTGAT
AAATGTGAATTATGTAAATTTAAAATAGATTTTTAATAATAATAGTTTTTAAAATGCCAT
TTTTCAATAATTTAAAATAGGGCTACATTACGAGTGTGAAAAGAAGCTTAGCAACAGATC
CTTTAGAGAAATTAACAGATCAAAATAGTTTTGTTGTAGTAAATGTAAGGTTATTGAAGA
CAGTAAGTAAAAATGA

>TTHERM_00241840(protein)
MQKLLKYICLFIVNYQLSSFITNNFLHFLSLYKNLLNKKQSERRLRNLNNKFLIQLDQIN
IYLLFLVSFLLERKKFFTHVDQMLNKFVLDKQTDRNFSPFDKYIFEQLHLNSNKINPFHT
DCKFTKRRVCYCNYHNSSLIEQRSQELNEAVNRYLKVDYSGATKQDLKRSLINRQLAQEK
VKRLQDLEDLFYMAPKYEKYVEAQKEEENAILREQIIQEQKNMIINGQCYYCQTTHSNKF
YEISPNPAETVVICEECAISNHPEVVTYNNKPAQKPENLIEKKKKRQEAQAKRLQTLQAK
KLLKMGTLDQNSNKQNKQGNEKSTTKLDKEDDEDESDISETQKECNWEKCKKKNKSDPED
ILVCKNCNKSFHAECCDPPLEKGIVSKYDWFCTECKLCIACNKNTKENELLMCDCCDRPF
HMSCLEPARTDIPEGRWFCKDCEKCPCCGVLLFQNYSRELLKQYSKQQVDNKIICKDCWV
YYQQKKYCPICFKIIEENAEGQFVYCDKCELWLHYECEKKLSNRSFREINRSKQFCCSKC
KVIEDSKQK