Identifiers and Description

Gene Model Identifier

TTHERM_00304150

Standard Name

SNF5

Aliases

PreTt21221 | 29.m00182 | 3696.m00005

Description

SNF5/SMARCB 1/INI1 family protein; Conserved protein. Member of the SWI/SNF complex.

Genome Browser (Macronucleus)



Genome Browser (Micronucleus)

External Links

Gene Ontology Annotations

Cellular Component

Biological Process

Domains

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_11574.1 9.997093137033517e-262
Description: hypothetical protein (354 aa)
Oxytricha Contig1260.1.g26 5.997739233660418e-28
Description: SNF5 / SMARCB1 / INI1
WormBase WBGene00011111 2.9990241513684e-21
Description: locus:snfc-5 status:Confirmed UniProt:Q21831 protein_id:CAA83625.1
SGD YLR321C 9.004296568159186e-20
Description: SFH1 Component of the RSC chromatin remodeling complex; essential gene required for cell cycle progression and maintenance of proper ploidy; phosphorylated in the G1 phase of the cell cycle; Snf5p paralog
Stentor Coeruleus SteCoe_10796 8.533047625744066e-17
Description: None
DictyBase DDB_G0279373 7.003160085026828e-16
Description: snf5 on chromosome: 3 position 2004876 to 2006425

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences

>TTHERM_00304150(coding)
ATGTCTTTAACTGTAACTTATAATAGTGGAATGGTTAAAAAGCCATTATACTAAAGAGTA
CACGAAGTACTTAATCGCTTAGGTTTATTTTATCAAGACATTTGTGTGGAGGCAAATATA
AATGAAGAAAGTTTGATTTAGTGGGTAAACTAAGACCCTGAATATGATTATGCCGAATTA
GAGCTTTCTCTTGAGAAATGGATAGATTCAAAGTACTAGCGTTCATAGAACAATGATGAA
AAATAATATTATTAAATTCGTTCTCAATATTTAAAAAGATTAGATATAAATTAATAGCTA
GCAAACTAATGGCTAGAGGCACCAAATATTGATAAAATTCCTTAAAATGACCAACCAAAT
GAGTATCTAATACCTATAAGCATTGATATTGAATTGGATGGATAGACTTTTAAAGAAAAT
ATAATTTGGAATTATTATGAACCATATTTTACTCCAGAAAACTTTGCTCATCACTTAGCA
AAAGAAAACAGATTAAGTCCTAATATAGAATAAGAAGTAGTTAATGTAATCCGCAGAGCT
CTTTAAAACTATCGCTTCTACGATCCTAAGGAAAGAGAGCTCATCCGTACTATTGAATTA
AATATATTGATAGAAAATGTATAGCTAAAAGATAGATTTGAGTGGGATATTAATGATTTC
ACAAATTCTCCAGAATAATTTGCTTTTAATATGTGCAATGAATTAGGTCTTAGTGGAGAA
TTTGCATAGAGAATAGCGTATTAAATAAGAGAATAGATTCTCTCCTTCTAAAAATAAATT
ATGGAAAGACGTATAAACTAAACTGCATCTAATTTCAAGAAGTCTACTCGTTCTTTAATT
GAATCCTCTTAAAATTTCACAAACTTTGACCCCAAAATTCACATCTAAGGAAATACAGTA
ATTACAGAAGAAAATTATTTACGTCCTGTACTTTAAGATAATGATTATGATAGTTTTCAA
TGGGAGCCAAAAATTTCAATCTTATAACCAGATGATATTAGAAAGGTATAGAAAGAAGAA
TAGAGAAAGCAACGTCTTATGCGTAGAACTCGTTGA


>TTHERM_00304150(gene)
ATGTCTTTAACTGTAACTTATAATAGTGGAATGGTTAAAAAGCCATTATACTAAAGAGTA
CACGAAGTACTTAATCGCTTAGGTTTATTTTATCAAGACATTTGTGTGGAGGCAAATATA
AATGAAGAAAGTTTGATTTAGTGGGTAAACTAAGACCCTGAATATGATTATGCCGAATTA
GAGCTTTCTCTTGAGAAATGGATAGATTCAAAGTACTAGCGTTCATAGAACAATGATGAA
AAATAATATTATTAAATTCGTTCTCAATATTTAAAAAGATTAGATATAAATTAATAGCTA
GCAAACTAATGGCTAGAGGCACCAAATATTGATAAAATTCCTTAAAATGACCAACCAAAT
GAGTATCTAATACCTATAAGCATTGATATTGAATTGGATGGATAGACTTTTAAAGAAAAT
ATAATTTGGAATTATTATGAACCATATTTTACTCCAGAAAACTTTGCTCATCACTTAGCA
AAAGAAAACAGATTAAGTCCTAATATAGAATAAGAAGTAGTTAATGTAATCCGCAGAGCT
CTTTAAAACTATCGCTTCTACGATCCTAAGGAAAGAGAGCTCATCCGTACTATTGAATTA
AATATATTGATAGAAAATGTATAGCTAAAAGATAGATTTGAGTGGGATATTAATGATTTC
ACAAATTCTCCAGAATAATTTGCTTTTAATATGTGCAATGAATTAGGTCTTAGTGGAGAA
TTTGCATAGAGAATAGCGTATTAAATAAGAGAATAGATTCTCTCCTTCTAAAAATAAATT
ATGGAAAGACGTATAAACTAAACTGCATCTAATTTCAAGAAGTCTACTCGTTCTTTAATT
GAATCCTCTTAAAATTTCACAAACTTTGACCCCAAAATTCACATCTAAGGAAATACAGTA
ATTACAGAAGAAAATTATTTACGTCCTGTACTTTAAGATAATGATTATGATAGTTTTCAA
TGGGAGCCAAAAATTTCAATCTTATAACCAGATGATATTAGAAAGGTATAGAAAGAAGAA
TAGAGAAAGCAACGTCTTATGCGTAGAACTCGTTGA


>TTHERM_00304150(protein)
MSLTVTYNSGMVKKPLYQRVHEVLNRLGLFYQDICVEANINEESLIQWVNQDPEYDYAEL
ELSLEKWIDSKYQRSQNNDEKQYYQIRSQYLKRLDINQQLANQWLEAPNIDKIPQNDQPN
EYLIPISIDIELDGQTFKENIIWNYYEPYFTPENFAHHLAKENRLSPNIEQEVVNVIRRA
LQNYRFYDPKERELIRTIELNILIENVQLKDRFEWDINDFTNSPEQFAFNMCNELGLSGE
FAQRIAYQIREQILSFQKQIMERRINQTASNFKKSTRSLIESSQNFTNFDPKIHIQGNTV
ITEENYLRPVLQDNDYDSFQWEPKISILQPDDIRKVQKEEQRKQRLMRRTR