Identifiers and Description

Gene Model Identifier

TTHERM_00408740

Standard Name

RRM16 (RNA Recognition Motif-containing protein 16)

Aliases

PreTt21490 | 44.m00157 | 3714.m00005

Description

RRM16 RNA-binding protein

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF00076 ) RNA recognition motif
  • ( TIGR01622 ) splicing factor, CC1-like family
  • ( TIGR01628 ) polyadenylate binding protein, human types
  • ( TIGR01642 ) U2 snRNP auxilliary factor, large
  • ( TIGR01649 ) hnRNP-L/PTB/hephaestus splicing factor family
  • ( TIGR01659 ) sex-lethal family splicing factor
  • ( TIGR01661 ) ELAV/HuD family splicing factor

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_10274.1 9.997093137033517e-262
Description: RNA-binding protein (711 aa)
Oxytricha Contig8744.0.g5 3.0009023271667765e-140
Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
DictyBase DDB_G0284663 5.000624069301489e-83
Description: mrd1 on chromosome: 4 position 2315842 to 2318657
SGD YPR112C 9.001321650308988e-69
Description: MRD1 Essential conserved protein that is part of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains
Stentor Coeruleus SteCoe_30797 1.5400882849875202e-51
Description: None
WormBase WBGene00004315 2.000214949834694e-50
Description: locus:rbd-1 status:Partially_confirmed UniProt:Q9XU67 protein_id:CAB05631.1

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences 

>TTHERM_00408740(coding)
ATGTCTAGCAGACTCATAGTTAAAAATATTCCAACTAATGTTGATGAAAAAAAGCTGAAA
GAAATATTTTCTAAATTTGGAAGCGTTACTGATGCCAAGGTTTGTTTAAAAGGACAGAAG
CATAGACGTTTTTGCTTTATCGGATATAAATCTGAAGCAGACGCTACTAAAGCAAAGGAA
TATTTCAATAATACCTACATATAAATGAATAAAATATAAGTTGATTTTGCTAAAACATCA
GATGACCCTAATATTGTAAACTAAAAAAACCTAAAGTTTAAAAAAAGAGAAGGTCAATAA
CAGGATTAAAAACTCTAAAAGAAAGTTAAGAAAAATGAAGAATAGCCAAGCGAAGTACCT
ACTAATAGCTCAGAGCTAACAGCTGAATAAAAGTTTGAAGAGTTTAAAAAGTTGATGAAG
GCAGGATCTAAAGGAACAATGAGTTGGAATGATGTTTTAACAACAATTAAATCAAAACCC
ACAAAGAAAGAACTTAAAAACCAAGCCAAAAATGATAAAAAGAAAGGTAACAATTAAGAT
GATGATGAAGAAGGAGAAAATGTAAACTTTGCTCAAACAGCTTTAGATGATTTAGATAAG
CAATTTGATAAGATTAAGAGCAAAAAAAGCAAAGGAAATAACGAAAATGACAATACAAAT
TAGGATGAGTAAGAAGAAAATTAAGAAGTATCTTAAGATGCCAAATAAAAAAATAGTAGT
AGCAATAATGACCCTATGATTGATGATTGCAGACTTTATGTTTTAAATTTACCTTATGAC
ATCACTGAAGAAGAAGTCAAAGATGTCTTCCGTAAATATGGTAAATTACTTGAAATAAAA
ATGCCAAAAGGAAAAGGAGGTTAGTTTAGAGGTTTTGCATACATCACTTACTCTATGGCA
GGTGAAGCCATGAGAGCTTTTGCTGAGTTAGATAATAAGATTTAATTCGGTAGAATTCTA
CATATTAGACCAGCTTTTAAAGAAAATAAATCAGAAGAATAAAAGAAAATAGAGGAAGAA
AAAGCTCAGAAAGACATTGAATTTGAAAAATCATCTTTTAAAAAATAAAAGAAGTCTGAA
TTAAAGAAATCATTAAATGATGACACTAATTGGAATACTCTTTTCTTAAATCCTAACACA
ATCTTAGAAACAGTCGCCTCAAGATACAACATTAAAAAGAGTGATATATTGTCACCTGAT
GCTGAAAATGCAGCTGTTAGAATTGCTCATGCTGAAACTTAAATTATAGCTGAAACTAAA
GAGTGGATGCTTAAATAAGGTCTAAACTTAGATTTCCTCAATACAGACAGAAAGAACTGT
GAAAGATCAAACAATACTATCCTTGTTAAGAATATTTCTTCTAAAGTAGAACAAGATAGT
TTTAAAGATTTGTTCAGTAGATATGGCTACGTTTCTAAATTCTTGCTTGCACCTAACAAG
GCTATTGGTGTAGTTCAATTTGAAGATTAAAGTCATGCTTTGAATGCTTTTGAAAAGCTC
TCCTATTTCTCTGTTAAAAATAATCCTTTATATCTTGAATGGGCTCCTCTTGGTATGATT
GACGTTGAATAGGCAGAAGAAGAAAAAGAAAAAGAAATTGAAATAGAAGATGAGTTATCT
AAGATTCTTTATATTAAGAACTTAAGTTTTAATACAACTGAATCTACACTATAAAGCTTA
TTTGAAAAAGCTAAAGTTGGCACAATTAGATCAGTCAAAATAGTAAAAAATAAAGGCTAA
TCTTAAGGTTATGGCTTTGTTGAATTCTCTGATCATGAAGCTGTTATTAAATCTATTAAA
AAACTTTAAAATTCTCTATTAGATGGTCATTCAATATAATTAAGTGTTTCCAAAAAAGAA
AAGAACGATCCCAAGAAAAAGGAGCGTAAACAAAAATAAGTTGACATCCCTATTTCAACT
AAATTAGTCATAAGAAATCTTGCTTTTGAATGTACTAAAAAAGAAGTAAGAGATCTCCTT
AAAGTGTATGGAGAAGTAAAATCTGTTCGTTTACCAAAGAAGATGAATGGTTAACATAGA
GGTTTTGCTTTCGCAGAATTTTCAAGTGCAGAAGAAGCAAAGAATGCATTTACAGCTTTG
GAAAATACTCACTTGTATGGTAGAAAGCTTGCCATAGAATGGGCCAAAACAGAATGA


>TTHERM_00408740(gene)
ATGTCTAGCAGACTCATAGTTAAAAATATTCCAACTAATGTTGATGAAAAAAAGCTGAAA
GAAATATTTTCTAAATTTGGAAGCGTTACTGATGCCAAGGTTTGTTTAAAAGGACAGAAG
CATAGACGTTTTTGCTTTATCGGTAAATCTAATATTATAATAGCTTTAAGAAGAGTCTCT
TACTTGTTTTATTATTAAATGTAGGATATAAATCTGAAGCAGACGCTACTAAAGCAAAGG
AATATTTCAATAATACCTACATATAAATGAATAAAATATAAGTTGATTTTGCTAAAACAT
CAGATGACCCTAATATTGTAAACTAAAAAAACCTAAAGGTAATTCAAAAAAACCTATATT
TAATAGCTCTATTTTAAAGCACAATATATAAAATAAAAAGCCTATTAAAGCTTATTTTCA
AAATCATTTTAAAACGCTTATAATTTAAATATTATCTCTGATTGGCTATTAATAATTTAC
ATTTAGTAAAATGCATAAAATTTATTGAAGATAGCTAATTTATTAATTGAATTGAATGCT
TTCTATTGAATAAATTTAAATAAAATTATTTTTTAGTTTAAAAAAAGAGAAGGTCAATAA
CAGGATTAAAAACTCTAAAAGAAAGTTAAGAAAAATGAAGAATAGCCAAGCGAAGTACCT
ACTAATAGCTCAGAGCTAACAGCTGAATAAAAGTTTGAAGAGTTTAAAAAGTTGATGAAG
GCAGGATCTAAAGGAACAATGAGTTGGAATGATGTTTTAACAACAATTAAATCAAAACCC
ACAAAGAAAGAACTTAAAAACCAAGCCAAAAATGATAAAAAGAAAGGTAACAATTAAGAT
GATGATGAAGAAGGAGAAAATGTAAACTTTGCTCAAACAGCTTTAGATGATTTAGATAAG
CAATTTGATAAGATTAAGAGCAAAAAAAGCAAAGGAAATAACGAAAATGACAATACAAAT
TAGGATGAGTAAGAAGAAAATTAAGAAGTATCTTAAGATGCCAAATAAAAAAATAGTAGT
AGCAATAATGACCCTATGATTGATGATTGCAGACTTTATGTTTTAAATTTACCTTATGAC
ATCACTGAAGAAGAAGTCAAAGATGTCTTCCGTAAATATGGTAAATTACTTGAAATAAAA
ATGCCAAAAGGAAAAGGAGGTTAGTTTAGAGGTTTTGCATACATCACTTACTCTATGGCA
GGTGAAGCCATGAGAGCTTTTGCTGAGTTAGATAATAAGATTTAATTCGGTAGAATTCTA
CATATTAGACCAGCTTTTAAAGAAAATAAATCAGAAGAATAAAAGAAAATAGAGGAAGAA
AAAGCTCAGAAAGACATTGAATTTGAAAAATCATCTTTTAAAAAATAAAAGAAGGTAATA
AATTATAAATTTAATAAATAATAAGAATACTTAATATTCCTTATTATATTTTTAATAGTC
TGAATTAAAGAAATCATTAAATGATGACACTAATTGGAATACTCTTTTCTTAAATCCTAA
CACAATCTTAGAAACAGTCGCCTCAAGATACAACATTAAAAAGGTAATTAATTATTTATA
TTAAGTAGGATTTTATTTAATTAAACTAAATATATTTTTATATAAAGAGTGATATATTGT
CACCTGATGCTGAAAATGCAGCTGTTAGAATTGCTCATGCTGAAACTTAAATTATAGCTG
AAACTAAAGAGTGGATGCTTAAATAAGGTCTAAACTTAGATTTCCTCAATACAGACAGAA
AGAACTGTGAAAGATCAAACAATACTATCCTTGTTAAGAATATTTCTTCTAAAGTAGAAC
AAGATAGTTTTAAAGATTTGTTCAGTAGATATGGCTACGTTTCTAAATTCTTGCTTGCAC
CTAACAAGGTAAAAAACATGTTTAAAATAATTAATATTAAAACTTTTGATTAAAATAAAA
GGCTATTGGTGTAGTTCAATTTGAAGATTAAAGTCATGCTTTGAATGCTTTTGAAAAGCT
CTCCTATTTCTCTGTTAAAGTAATAATAATAAAGTTAATATTTATTTGTTTAAATATCTA
TTTAAATATAGAATAATCCTTTATATCTTGAATGGGCTCCTCTTGGTATGATTGACGTTG
AATAGGCAGAAGAAGAAAAAGAAAAAGAAATTGAAATAGAAGATGAGTTATCTAAGATTC
TTTATATTAAGAACTTAAGTTTTAATACAACTGAATCTACACTATAAAGCTTATTTGAAA
AAGCTAAAGTTGGCACAATTAGATCAGTCAAAATAGTAAAAAATAAAGGCTAATCTTAAG
GTTATGGCTTTGTTGAATTCTCTGATCATGAAGCTGTTATTAAATCTATTAAAAAACTTT
AAAATTCTCTATTAGATGGTCATTCAATATAATTAAGTGTTTCCAAAAAAGAAAAGAACG
ATCCCAAGAAAAAGGAGCGTAAACAAAAATAAGTTGACATCCCTATTTCAACTAAATTAG
TCATAAGAAATCTTGCTTTTGAATGTACTAAAAAAGAAGTAAGAGATCTCCTTAAAGTGT
ATGGAGAAGTAAAATCTGTTCGTTTACCAAAGAAGATGAATGGTTAACATAGGTAAATAA
TTAATACTTCATTAAATAACAAAATTAATAATATAAATTTAAAATAATTAGAGGTTTTGC
TTTCGCAGAATTTTCAAGTGCAGAAGAAGCAAAGAATGCATTTACAGCTTTGGAAAATAC
TCACTTGTATGGTAGAAAGCTTGCCATAGAATGGGCCAAAACAGAATGA


>TTHERM_00408740(protein)
MSSRLIVKNIPTNVDEKKLKEIFSKFGSVTDAKVCLKGQKHRRFCFIGYKSEADATKAKE
YFNNTYIQMNKIQVDFAKTSDDPNIVNQKNLKFKKREGQQQDQKLQKKVKKNEEQPSEVP
TNSSELTAEQKFEEFKKLMKAGSKGTMSWNDVLTTIKSKPTKKELKNQAKNDKKKGNNQD
DDEEGENVNFAQTALDDLDKQFDKIKSKKSKGNNENDNTNQDEQEENQEVSQDAKQKNSS
SNNDPMIDDCRLYVLNLPYDITEEEVKDVFRKYGKLLEIKMPKGKGGQFRGFAYITYSMA
GEAMRAFAELDNKIQFGRILHIRPAFKENKSEEQKKIEEEKAQKDIEFEKSSFKKQKKSE
LKKSLNDDTNWNTLFLNPNTILETVASRYNIKKSDILSPDAENAAVRIAHAETQIIAETK
EWMLKQGLNLDFLNTDRKNCERSNNTILVKNISSKVEQDSFKDLFSRYGYVSKFLLAPNK
AIGVVQFEDQSHALNAFEKLSYFSVKNNPLYLEWAPLGMIDVEQAEEEKEKEIEIEDELS
KILYIKNLSFNTTESTLQSLFEKAKVGTIRSVKIVKNKGQSQGYGFVEFSDHEAVIKSIK
KLQNSLLDGHSIQLSVSKKEKNDPKKKERKQKQVDIPISTKLVIRNLAFECTKKEVRDLL
KVYGEVKSVRLPKKMNGQHRGFAFAEFSSAEEAKNAFTALENTHLYGRKLAIEWAKTE