Identifiers and Description

Gene Model Identifier

TTHERM_00421170

Standard Name

RPB6 (RNA polymerase II subunit 6)

Aliases

PreTt07241 | 46.m00296 | 3679.m00146

Description

RPB6 DNA-directed RNA polymerase subunit K; Subunit shared in RNA polymerases I- II & III

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Molecular Function

• DNA binding (IEA) | GO:0003677
• DNA-directed 5'-3' RNA polymerase activity (IEA) | GO:0003899

Biological Process

• DNA-templated transcription (IEA) | GO:0006351

Domains

• ( PF01192 ) RNA polymerase Rpb6

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_10954.1	2.9996910481190226e-100
	Description: RNA polymerase K/14 to 18 kDa subunit protein (164 aa)
Oxytricha	Contig8949.0.g106	9.997975313387782e-28
	Description: RNA polymerase Rpb6
SGD	YPR187W	2.000130478826482e-26
	Description: RPO26 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit
WormBase	WBGene00007355	9.996273942859018e-26
	Description: locus:rpb-6 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 status:Confirmed UniProt:Q17684 protein_id:CAA90053.1
WormBase	WBGene00009012	9.996273942859018e-26
	Description: status:Confirmed UniProt:G5EE80 protein_id:CAA91040.1
DictyBase	DDB_G0291037	3.001290106883431e-24
	Description: rpb6 on chromosome: 5 position 4838044 to 4838564
Stentor Coeruleus	SteCoe_17283	0.00000000000003442477108469977
	Description: None

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00421170(coding)
ATGAGCGACTACGGTGATAACGATTACTCTGATCCTGGTAATTTTGATGAGGATAATATG
GGAGATGACATGGATGATGGAGATCAAGAATCTGAAGAAGCCTCTTCCAGATCCGGAGAT
GAGGGTGATTCAGCTGATGATTCTGATCACTCTGGAACTGAATCTGAAAGTTAATCTGAA
GTCGATAAGGACGAATATCCTGAAGAAATGGTTATCATAAAAGATTAAGATAGAGATTAA
TAAGCAAGTAAAACCAAAGTAACACCTCCTTTCCTCACAAAATATGAAAAAGCCAGAATT
ATTGGAACACGCGCCTTATAAATTGCTCAAAACTCTCCAATCTATGTAGAAACAGATGAC
AAGGACTATGATCCTATTGCTATTGCCGAAAAAGAGTTTGTCTAGAAAAAGATCCCCTTT
ATTATTAGAAGATATCTTCCCAATAAAGAATATGAAGATTGGGCTCTCGATGAATTAGAA
GTCTTAGATTGA

>TTHERM_00421170(gene)
ATGAGCGACTACGGTGATAACGATTACTCTGATCCTGGTAATTTTGATGAGGATAATATG
GGAGATGACATGGATGATGGAGATCAAGAATCTGAAGAAGCCTCTTCCAGATCCGGAGAT
GAGGGTGATTCAGCTGATGATTCTGATCACTCTGGAACTGAATCTGAAAGTTAATCTGAA
GTCGATAAGGACGAATATCCTGAAGAAATGGTTATCATAAAAGATTAAGATAGAGATTAA
TAAGCAAGTAAAACCAAAGTAACACCTCCTTTCCTCACAAAATATGAAAAAGCCAGAATT
ATTGGAACACGCGCCTTATAAATTGCTCAAAACTCTCCAATCTATGTAGAAACAGATGAC
AGTAATATAAAAATTATTTTTTTTTAAGCTTGACAGAAATAGATTACCGAAATTAGAAAA
CAAGAATATTTAGAATACCAAACTGCAATTTAATGAAAATAGCTAAGTATTTTCCTTATT
TCGATAGCATAAATAACAATTTAAGTATTTATTTGCAAGAGATAGCAAAATAATTTAAAT
TTATGGAACAAATATGAAAATGATGAAAATAAATAATAAAAAAAAACAAAATTTTTTAAA
AGGAATGAACAAAGATAGTTTTATTTCAAGCAAAAATTTGATTTTAATTTGAATATAAAT
AAAATAATTTATTTATTTTAAATAAAACAGAGGACTATGATCCTATTGCTATTGCCGAAA
AAGAGTTTGTCTAGAAAAAGATCCCCTTTATTATTAGAAGATATCTTCCCAATAAAGAAT
ATGAAGATTGGGCTCTCGATGAATTAGAAGTCTTAGATTGA

>TTHERM_00421170(protein)
MSDYGDNDYSDPGNFDEDNMGDDMDDGDQESEEASSRSGDEGDSADDSDHSGTESESQSE
VDKDEYPEEMVIIKDQDRDQQASKTKVTPPFLTKYEKARIIGTRALQIAQNSPIYVETDD
KDYDPIAIAEKEFVQKKIPFIIRRYLPNKEYEDWALDELEVLD