Identifiers and Description

Gene Model Identifier

TTHERM_00437617

Standard Name

RAD27 (5' to 3' exonuclease)

Aliases

3708.m00952

Description

flap endonuclease-1; flap endonuclease-1 PIN domain protein

Genome Browser (Macronucleus)



Genome Browser (Micronucleus)

External Links

Gene Ontology Annotations

Molecular Function

Biological Process

Domains

  • ( PF00560 ) Leucine Rich Repeat
  • ( PF00752 ) XPG N-terminal domain
  • ( PF00867 ) XPG I-region
  • ( PF01367 ) 5'-3' exonuclease, C-terminal SAM fold
  • ( PF07708 ) Tash protein PEST motif

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_12460.1 9.997093137033517e-262
Description: flap endonuclease-1 (387 aa)
Oxytricha Contig12777.0.g42 9.996261361959507e-120
Description: XPG I-region
WormBase WBGene00000794 5.998625834015334e-112
Description: locus:crn-1 Flap endonuclease 1 status:Confirmed UniProt:Q9N3T2 protein_id:CCD72553.1
SGD YKL113C 2.000234809436283e-103
Description: RAD27 5 to 3 exonuclease, 5 flap endonuclease, required for Okazaki fragment processing and maturation as well as for long-patch base-excision repair; member of the S. pombe RAD2/FEN1 family
DictyBase DDB_G0284987 1.9998944264638884e-101
Description: repG on chromosome: 4 position 2762877 to 2764154
Stentor Coeruleus SteCoe_27474 1.5400882849875202e-51
Description: None

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00437617(coding)
ATGGGAATTCATAAATTGATGGATCTATTAAAGGAGAAAGCTCCTGGATGCATTAAGACA
TCAGATCTAAAATTCTATGCTGGCCGTATGATTGCATGTGATGCCTCTATGGCAATGTAT
TAATTTTTAGCAACTACAAGCAGTGCTTCTGATTTCTAGATATAAAATTTAACAGATAAA
GATGGCAATAAAACAGGACATTTAGTTGGTTTACTTAATAGAACTGTAATGCTTATCGAA
AATGGTCTCAAGCCAGTTTGGGTTTTCGATGGTAAACCTCCTTAATTCAAGAGTGGTGAA
CTTGCAAGAAGACAAAAAGCAAAAGACGAAGCTGCTGAAAAGTAAAAAACTGCTATAGAA
ACTGGTGATATGTAAGAAGCTTTAAAGCAAGAACAACGTAATTTGCATATTACAAAAGAA
ATGAAAGCTGATGCAATAAAATTACTTTAATTGGTTGGTGTTCCAGTGATTTTAGCCCCA
TGTGAAGCAGAAGCATAATGCGCTGCTTTGGCAAAAGCTAAGAAAGTTTTTGCTACTGTT
ACTGAAGATATGGATGCTCTCACTTTTGCTACACCTTTTCTCTTGAGAAATCTCAATAGT
AAAAAGGAACCAATTACAGAAATAAACTACGAAAAGATGCTATAAGAATTAAAGTTATCT
CATAATGAATTTGTTGATTTGTGTATCTTATGTGGATGCGATTATTTAGGACGTATAGAA
GGTGTTGGCCCAGTTAATGCTTTCAAACTTATAACAGAGCACAAATCTCTAGAGAAAGTT
CTTGAACACATGGAAGAAGTTAACAAACAAAGCACTAAAAAATAAAAATATACAGTACCA
AGTTCTTATGATTATGTATCAGCAAGAGATCTTTTTATTAATCCTGAAGTTACTGATCCA
GAGACTATTTAGCTTGAATGGAAGAAACCAGATGTAGAAGAATTAAAGAAATTTTTAGTA
GAAGAAAAAGGATTTAGCGAGTAAAGAGTTACCAGTTAGATGGAAAAAGTTTTAAATGCT
AAAGAACATAAAGGTTCTTAAACCAGACTGAATGATTTCTTTAAAGTATAGCCTAAAGAT
ACATCATCAACAAGTAAGGCATCTAAAAAGCCAACAAATACTAAAAGTGCAAATAAAAAG
GGAGGAAAAAAATGA


>TTHERM_00437617(gene)
ATGGGAATTCATAAATTGATGGATCTATTAAAGGAGAAAGCTCCTGGATGCATTAAGACA
TCAGATCTAAAATTCTATGCTGGCCGTATGATTGCATGTGATGCCTCTATGGTAATCAAT
AACTAATTTAAGCATAATCTAATTATTTTATTCATATTTACTATAAATAGGCAATGTATT
AATTTTTAGCAACTACAAGCAGTGCTTCTGATTTCTAGATATAAAATTTAACAGATAAAG
ATGGCAATAAAACAGGACATTTAGTTGGTTTACTTAATAGAACTGTAATGCTTATCGAAA
ATGGTCTCAAGCCAGTTTGGGTTTTCGATGGTAAACCTCCTTAATTCAAGAGTGGTGAAG
TAATAAATAAATAAACAAATTCATTCAACATTTTTTAAAGATTGAACTTAATGAAATATT
TAAAAATATTTTTTATTTATAAGCTTGCAAGAAGACAAAAAGCAAAAGACGAAGCTGCTG
AAAAGTAAAAAACTGCTATAGAAACTGGTGATATGTAAGAAGCTTTAAAGCAAGAACAAC
GTAATTTGCATATTACAAAAGAAATGAAAGCTGATGCAATAAAATTACTTTAATTGGTTG
GTGTTCCAGTGATTTTAGCCCCATGTGAAGCAGAAGCATAATGCGCTGCTTTGGCAAAAG
CTAAGAAAGTTTTTGCTACTGTTACTGAAGATATGGATGCTCTCACTTTTGCTACACCTT
TTCTCTTGAGAAATCTCAATAGTAAAAAGGAACCAATTACAGAAATAAACTACGAAAAGA
TGCTATAAGAATTAAAGTTATCTCATAATGAATTTGTTGATTTGTGTATCTTATGTGGAT
GCGATTATTTAGGACGTATAGAAGGTGTTGGCCCAGTTAATGCTTTCAAACTTATAACAG
AGCACAAATCTCTAGAGAAAGTTCTTGAACACATGGAAGAAGTTAACAAACAAAGCACTA
AAAAATAAAAATATACAGTACCAAGTTCTTATGATTATGTATCAGCAAGAGATCTTTTTA
TTAATCCTGAAGTTACTGATCCAGAGACTATTTAGGTAAAATTGATCTTTTTTATGTAAA
TATTTATATATAAACTGTGTTTATTTATAAAAAGCTTGAATGGAAGAAACCAGATGTAGA
AGAATTAAAGAAATTTTTAGTAGAAGAAAAAGGATTTAGCGAGTAAAGAGTTACCAGTTA
GATGGAAAAAGTTTTAGTAAAATTATATTTTTTAAATTAAATAAAAATTTATTTTAAATT
AATCATAGAATGCTAAAGAACATAAAGGTTCTTAAACCAGACTGAATGATTTCTTTAAAG
TATAGCCTAAAGATACATCATCAACAAGTAAGGCATCTAAAAAGCCAACAAATACTAAAA
GTGCAAATAAAAAGGGAGGAAAAAAATGA


>TTHERM_00437617(protein)
MGIHKLMDLLKEKAPGCIKTSDLKFYAGRMIACDASMAMYQFLATTSSASDFQIQNLTDK
DGNKTGHLVGLLNRTVMLIENGLKPVWVFDGKPPQFKSGELARRQKAKDEAAEKQKTAIE
TGDMQEALKQEQRNLHITKEMKADAIKLLQLVGVPVILAPCEAEAQCAALAKAKKVFATV
TEDMDALTFATPFLLRNLNSKKEPITEINYEKMLQELKLSHNEFVDLCILCGCDYLGRIE
GVGPVNAFKLITEHKSLEKVLEHMEEVNKQSTKKQKYTVPSSYDYVSARDLFINPEVTDP
ETIQLEWKKPDVEELKKFLVEEKGFSEQRVTSQMEKVLNAKEHKGSQTRLNDFFKVQPKD
TSSTSKASKKPTNTKSANKKGGKK