Identifiers and Description

Gene Model Identifier

TTHERM_00476670

Standard Name

RPL20 (Ribosomal Protein of the Large subunit #20)

Aliases

PreTt06196 | 58.m00168 | 3719.m00028 | RPL18A

Description

RPL20 60S ribosomal protein L18a; Homolog of Yeast RPL20- Human RPL18A; Ribosomal L18ae protein family protein

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

Gene Ontology Annotations

Molecular Function

• rhamnulokinase activity (IEA) | GO:0008993

Biological Process

• asparagine metabolic process (IEA) | GO:0006528
• negative regulation of biosynthetic process (IEA) | GO:0009890
• pyrimidine ribonucleotide catabolic process (IEA) | GO:0009222

Domains

• ( PF01775 ) ribosomal L18ae protein family

Gene Expression Profile

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_14167.1	9.995516318087232e-125
	Description: ribosomal L18ae protein family protein (191 aa)
Oxytricha	Contig16734.0.g67	1.0004249259458435e-52
	Description: Ribosomal L18ae/LX protein domain
WormBase	WBGene00004432	7.997739975804982e-43
	Description: locus:rpl-20 60S ribosomal protein L18a status:Confirmed UniProt:O44480 protein_id:CCD68709.1
DictyBase	DDB_G0285881	2.0005131442217614e-40
	Description: rpl18a on chromosome: 4 position 3775456 to 3776276
SGD	YOR312C	9.9981864321491e-40
	Description: RPL20B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Ap and has similarity to rat L18a ribosomal protein
Stentor Coeruleus	SteCoe_36250	1.2995814250075031e-24
	Description: None

General Information

No Data fetched for General Information

Associated Literature

1. Ref:22052974: Klinge S, Voigts-Hoffmann F, Leibundgut M, Arpagaus S, Ban N (2011) Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Science (New York, N.Y.) 334(6058):941-8

Sequences

>TTHERM_00476670(coding)
ATGGTTAGAAAAGCTGCCCAAGAACCCAAGGATGACACCCTCTAAATGAAGGTCAGACAA
TACGTCGTCTCTGCTGCTAGACTTCCCATCGAATAGGGTACCAAGCCTGAAATTCTCTAA
ATGAGAGTCTTCGCTAGAGATGAAGTCCATGCTAAGACCAAATTCTGGTACAACATGAGA
AAGTTGAACAAGATTAAAAGATCTTAAGGTAGAATCCTCTCCGTTAACGAAATCTACGAA
AAGTCCCTCAACACCGTCAAGACCTACGGTATCGTTCTTAAGTACTAATCTAGAACTGCT
ATCCACAACATGTACAAGGAATACAGAGATGTCTCTTTAAACGGTGCTGTTTCTCAACTT
ATCTAAGATATGGCTGGTAACCACAGAGCTCAACCTGATACCATCCAAATTATCAGAACT
GCCACCCTTGAACCCAAGGACATTAAGAGACCTGCTACCCTCGCCATGAGAAACGCTGCT
CTTAAGTTCCCCATCGTCAAGACCATCCACAGACCCTCCGAAAAGAAATACAGAACTGTT
TACAAGGCCACCAGACCTACCACTTTCTAGTGA

>TTHERM_00476670(gene)
ATGGTTAGAAAAGCTGCCCAAGAACCCAAGGATGACACCCTCTAAATGAAGGTAGGACCA
GCTTTAAAAATAAAAAAATTTTAATTTCTTCATCAAGTATTTCTTCAGTCTTTGGTAGGA
AGGCATATCATGCTCACCTGACTACCTCATGCTCCTTATTAACTTTAAGAATGCATTTTT
ACACAACATCTCTCTTGGATTTATCAAAAAAAATAATAAGCAAATATTGCTTCAATTAGT
AATTTAACCCTATTAAATATTGCTATCATGTCCAAATCTAGCAACTTTTGAAAAAAATGA
AAAGCAAAGGAGAGGTTTTGCAATATTGGCATTACGCTTCTGATTTCATTCGATCAGAAA
TAACAAAAATAGTGTTCATTATTTGATAGGGAGAGATGGATGGAATTAATTAATAATTAA
TTGCATATTTAGAGAAATACTCAAAATAAAAAGACTGACTTGAATGAAATTAAGTTATCA
TATTTATAATTATTTATTATTAATCAAAAGGTCAGACAATACGTCGTCTCTGCTGCTAGA
CTTCCCATCGAATAGGGTACCAAGCCTGAAATTCTCTAAATGAGAGTCTTCGCTAGAGAT
GAAGTCCATGCTAAGACCAAATTCTGGTAAGATAAATTTAAGATAAATTCAGATTTAGTC
TTCAAAACGAATTAGTCAGAGAGAAAAATATTTTAAACCCATTAACAATCACAATCGTTC
ATTTGCTGTGAGAAAATAAATATACTGGATGGATTAAGCAAAAGGCATTATAGTACAATA
ATTTAAGGTTCTACAATAAAACATATTATCAGTGCAATCTATAAATCAATCAATCAACCA
CTGCATACTAATATATCTTCACTAATACAATATATAAATAAATAAATAAATAAATGAGTG
AGTGAGTGAGTTAGTGAATTAGCTGCATTAATAACAGCAAGCAACAATAAAAAAACAAAT
TCATTCTGTTAAATAAATCTAATAAAAATTTAAAAATTTTAATTAAAAAGTTGAATTAAC
TTAGGCTATAATTCTGCTCTTCTTTAATTAAATGCAAAAATTAGTTTTATGGCTAGGATA
CAAAAAAATTTAATAACCTTAACTTGTTAGAATAAATTTGATTAGATCAACATCATAGTT
TTAGCATTTATTTAAATAAATGAAGGAGCAAACAAACAAGTAAATTAATAAATAAATAAA
TCGATTGTGAAAATGGGAAAGGCTTAAAGTAAAAATAGTTAAAACAATAATATTTAGAAG
GATAGATATATTAATTTATGTAAAAAAAGATCTTAAATCAAAAAAAAATTCAGCGAAATC
AAGCAATATGGGTGAACATATTTAGTTGAAAATATTTATAAAGATAATCCTAAAATTATC
CTGATGAAAAGCAGCAAATATTTCATTTTTAAATATTTCAAAAAAAGCATAGCTTGTAAT
TAAAAAAAAATTATGGAAGCAATCAACAAAATAATTCCACTAATTCGATTTGACTGACAC
TCTTACAAATTCCATTAAATAAATAAATATTAAATATATTTTCTTTTTTAAATAGGTACA
ACATGAGAAAGTTGAACAAGATTAAAAGATCTTAAGGTAGAATCCTCTCCGTTAACGAAA
TCTACGAAAAGTCCCTCAACACCGTCAAGACCTACGGTATCGTTCTTAAGTACTAATCTA
GAACTGCTATCCACAACATGTACAAGGAATACAGAGATGTCTCTTTAAACGGTGCTGTTT
CTCAACTTATCTAAGATATGGCTGGTAACCACAGAGCTCAACCTGATACCATCCAAATTA
TCAGAACTGCCACCCTTGAACCCAAGGACATTAAGAGACCTGCTACCCTCGCCATGAGAG
TAATTTATCAATAATTTATTAAATTAAAAATTCTAATTGAGGACAAACAAAACTTTTCAT
ATTTTATATTTTTAAGAATTCTATTTCCATTTTAAATGAATTATATTGGATCTAATTTAT
TTTTAATGAGATATGTTTGTTTGTCTTTGATTTACTGAAAAAAATATGCTGTTAAAAAAA
ACTATTTATTAAAATTTATCTTCATAAAAATTTAGAACGCTGCTCTTAAGTTCCCCATCG
TCAAGACCATCCACAGACCCTCCGAAAAGAAATACAGAACTGTTTACAAGGCCACCAGAC
CTACCACTTTCTAGTGA

>TTHERM_00476670(protein)
MVRKAAQEPKDDTLQMKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMR
KLNKIKRSQGRILSVNEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQL
IQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTV
YKATRPTTFQ