Identifiers and Description

Gene Model Identifier

TTHERM_00484731

Standard Name

RRM28 (RNA Recognition Motif-containing protein 28)

Aliases

3719.m00872

Description

RRM28 splicing factor u2af large subunit

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF00076 ) RNA recognition motif
  • ( TIGR00332 ) desulfoferrodoxin ferrous iron-binding domain
  • ( TIGR01642 ) U2 snRNP auxilliary factor, large

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_14252.2 9.997093137033517e-262
Description: hypothetical protein (596 aa)
WormBase WBGene00000552 9.997093137033517e-262
Description: locus:cmd-1 Calmodulin status:Confirmed UniProt:O16305 protein_id:CCD69969.1
Oxytricha Contig1218.1.g100 3.000842737734004e-34
Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase WBGene00006697 9.995528898049344e-31
Description: locus:uaf-1 status:Confirmed UniProt:Q8MXS2 protein_id:CCD62281.1
Tetrahymena borealis EI9_03478.1 9.995528898049344e-31
Description: hypothetical protein (265 aa)
DictyBase DDB_G0286395 5.998760051700188e-30
Description: u2af2 on chromosome: 4 position 4405482 to 4407497
Stentor Coeruleus SteCoe_19768 0.00000000003775134544279098
Description: None
SGD YIL061C 0.00000030014504373857585
Description: SNP1 Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences 

>TTHERM_00484731(coding)
ATGAGTTTTCAAAATCAAGAAATTCACGATGACTTGAATGAAATGTAAAAGCTAACTGAA
GCATAGGAAGAACAATTCAAGCAACAAAATGACAATGACTATGATTAAGTAGGAACAAGT
GGTTATTAAGAAATAATCAAAAGATCAAGAGAAAATTCGATAGATTCAGCCCGTTCGCGC
TCAAGATCAATCAATGAAAGAAAGAGAAATTATAACAGATAGCAAAATAGCAACGAAGAA
GAGAGTCCAAAGATGGTCAATAAAGTAGAAGTACCTGTGATTAAGTTAGATAACTAATCA
GGATATCGTCACGCTAGACGTCTTTATATTGGTAACATTCCTGAAACTATTAATTAAGAA
TATCTAAGTGAATGGCTTTATCGTTCTCTTGAAGCAGCTGGAGGTCTTTAGCCTTCTTTG
CCCTCAGAAAATCCAATAGTAAAATGTGAAATTGATCCTAAAGGAAGGTTTGCATTTACT
GAGTTAAGGTCAATTGAAGAAACCACTGCTTTGCTTCAATTAGATGGAATTATTTTGTGG
CACAGATAATTAAGAATAAGAAGACCTACTGAATATGAAAAGTTCCCTAAGGTTCAAGGA
CAATTTGAAGCTAATATTCCCAAATTGAATTTCGATCTTTTCAAAACTGTTGGAATAGTA
ATTATTCCTACTATTGTTGATGATGGTCCTAACAAGATATTCTTGGCTAACTTGCCCACT
AAGATGGATGAGTTAATGATTTTAGATGAATTAAAACTTAGAGATATGGGTGAAATTAAA
GCATTCCATTTAGTTAAAGATAATCAAACTAACTAAAGTAAGGGATATGCCTTTTTTGAA
TTCAAAGATCCTTCTCTTACTGATAATTGTATAGAGACATTACATGGTATGCAATATGCT
GGTAGAACTCTTACATGCAAGAGATCTTAAATAGGAGGCTTAGGCAATAAATAAATGTCA
ACAGGAAACAATAAATAAAACAATAATAGAAATAGCAATCAGTAAAATAACTTAGGTGGT
AATAATAACATGCAAAGATAGAGTTTCTCTTCAGAAAATATTGATTCTATATAGGGATAA
AACTAATAAGGTATCAATGAAGGCAGTGGATTCTTTCCCAATTACTAATCAAACACACAA
GGTGGTGGAAATAACTAAAACAAGGGTATGAACTAAAATTATCAAAATAATGGCAATAAT
CATAACAACAATAATAAAAGAGGAAGAAACTTTGGAAATTAAAATAACTCAAATAACAAT
TACTACAATAATAATGGGGCAGGAATGAATAATGGTAATAACAATAATAATGGAAACAAT
AGAAGATTCTAAAATAACAACAATATGAATCACAATTAGTAAGGTTAGTTTACAAACGGA
GGAAATAAATTCAATAAAGGGCATGGTAACAACAACGGAATGAGTAACAAGAAGTAAAAT
TAATGGAACGGTTAGCAAAATAATTAAATCCCAAGCTAAGATAATTAAACTGGTATCTCC
TCTGATGGATATTATGAAGGAAGTAGTAGCTAAATTGGCTAATAATATGATGTTAGCTAA
ATGTACAACTATCAATAATCATAACAAGGATCTCATTATATGATGCAAGACTAATCTAAT
CCTTATTAATGA


>TTHERM_00484731(gene)
ATGAGTTTTCAAAATCAAGAAATTCACGATGACTTGAATGAAATGTAAAAGCTAACTGAA
GCATAGGAAGAACAATTCAAGCAACAAAATGACAATGACTATGATTAAGTAGGAACAAGT
GGTTATTAAGAAATAATCAAAAGATCAAGAGAAAATTCGATAGATTCAGCCCGTTCGCGC
TCAAGATCAATCAATGAAAGAAAGAGAAATTATAACAGATAGCAAAATAGCAACGAAGAA
GAGAGTCCAAGTAATATAAATCAAAATAGCAGGCCTGTTGCTTAGAGAAGCAATCATTTC
TTTGAGTAAAATGATGAATAGAATGAATAAAATTTAGGAGAAAATGATTTGAATAGTAAC
AACACAACTGGAGTTGATTTTAGTAAAATGAATTTCAACTAAAGTTTGTAATAACTTTAA
GAGATGGTCAATAAAGTAGAAGTACCTGTGATTAAGTTAGATAACTAATCAGGATATCGT
CACGCTAGGTATAATTTCATAGATTAATAAATTTACTAAATAACCACGGTATTTTCCTTC
CTGATTAATAAAAGCAGCTTTAATAACATAGCTCTGCTTTAATTGCATTAAGTAATGCTA
TTTTGCAGAAACATGTTGTTTTAAAGAGCATACTTTTGAAGCTGAAAGAAGAAAAAAAAC
TAAATAAATAACTTCGCCATAATATCAAAAGCAAACAAGCAAGAAAAAAAAACAAACAAA
CAAACAAACCTAATTTTCTTCCCCACTCTTTTTCAAATTTTTTCTCTTTACCATTTTTGT
AGCAATAAAAAAATCATCTTATTTTCTGTTTCTTTGATTTTTTATCATTGACCACCCCTC
ACAAATAATTTACAAAAAACTTTCTAATCCCCCTCCTTTCAATATTTTGCTTTGTATTAT
AAAGCAAAATCTATTTATCTATCTATCTAATCTTATCTCTCATTCATTCATTTATTCAAT
CTTTCTTCATTGATTCTTATTTTTTTTCTTTCTAATTTACCATGAATACATACTTATATT
ATATGTATATAATATTTTATAATCATATTATAATTAGCACCATACTTTATCATCAATAGC
AATTATTAAAAAATAAATCTTAATTTCTTTTCCTTCTTTTTCAATCAAATAAAGAATTTA
AAATTATTTTTTTCCCCCTCTTTTCTTCAATCTTTTTTTATTTATGACTGACCAAAAATT
AATTTTAAAAACTATATGCTACCTGTTTTTTCAAATATCTTCTTTTTCATTCTTTTTAAT
AGAAAAAGTCAACAAAAGAGAATTACATGATATTATACATTTATGAATCATCAAATATTT
TGTAGTATTTACTGCTTTCTCTCTTCTTTCTTCTTTTATTTTTTGCTTCTGCTCTAAATA
TTCATTCATTCATTTATTATTATTCTTCATATGTTATTTAATTTTACTTAAAATTGTTCA
TTTAAAATCATTTTAGTAGAAAAAGTATCTCTCCTTTACGTACCATTTAATTTTTTTAAA
ATTAGAAAGAAAACAAATAAACAAACATTCATATAAATAAACTAACTATTTACAGGATTG
ATTTAGGGTTGAAACAAATAAAAATAAACAAATAATAATGTATTATAAGTTGAGGGAAAG
ATCCGTATCACCTTCAAAGATATTTAAATAAAAAAAATCTTCTCATACAGTTTTAATATG
ATTCGATATCAATAGCTTTTTAATATTGCTATTTCGTGATATTTTTGAATTTAAATCAGG
AAAATATGCCGCTAATTTTAATATTTTTGAAATTTCATGAATTAATTAATTTAATTATAG
ACGTCTTTATATTGGTAACATTCCTGAAACTATTAATTAAGAATATCTAAGTGAATGGCT
TTATCGTTCTCTTGAAGCAGCTGGAGGTCTTTAGCCTTCTTTGCCCTCAGAAAATCCAGT
AAAAAATTTTATTAATAAATATTTCTAAAATTAAAAATATTATTTTTAACTTTATAAAAG
ATAGTAAAATGTGAAATTGATCCTAAAGGAAGGTTTGCATTTACTGAGTTAAGGTCAATT
GAAGAAACCACTGCTTTGCTTCAATTAGATGGAATTATTTTGGTAATAAAATAAACAATA
AAACATTTTATAATTTTAATTAATTAATTAATTAAAAAATTAGTGGCACAGATAATTAAG
AATAAGAAGACCTACTGAATATGAAAAGTTCCCTAAGGTTCAAGGACAATTTGAAGCTAA
TGTAATTAATTAATTTCAATTATTTTAATTATTTAATTTTACTTATTTAAAATAGATTCC
CAAATTGAATTTCGATCTTTTCAAAACTGTTGGAATAGTAATTATTCCTACTATTGTTGA
TGATGGTCCTAACAAGATATTCTTGGCTAACTTGCCCACTAAGATGGATGAGTTAATGAT
TTTAGATGAATTAAAACTTAGAGATATGGGGTAATAATTTACTTTTGATTATATATTTTA
AAACTTGTTAATTCATATTTTTTTGATTAAAACAGTGAAATTAAAGCATTCCATTTAGTT
AAAGATAATCAAACTAACTAAAGTAAGGGATATGCCTTTTTTGAATTCAAAGATCCTTCT
CTTACTGATAATTGTATAGAGACATTACATGGTATGCAATATGCTGGTAGAACTCTTACA
TGCAAGAGATCTTAAATAGGAGGCTTAGGCAATAAATAAATGTCAACAGGAAACAATAAA
TAAAACAATAATAGAAATAGCAATCAGTAAAATAACTTAGGTGGTAATAATAACATGCAA
AGATAGAGTTTCTCTTCAGAAAATATTGATTCTATATAGGGATAAAACTAATAAGGTATC
AATGAAGGCAGTGGATTCTTTCCCAATTACTAATCAAACACACAAGGTGGTGGAAATAAC
TAAAACAAGGGTATGAACTAAAATTATCAAAATAATGGCAATAATCATAACAACAATAAT
AAAAGAGGAAGAAACTTTGGAAATTAAAATAACTCAAATAACAATTACTACAATAATAAT
GGGGCAGGAATGAATAATGGTAATAACAATAATAATGGAAACAATAGAAGATTCTAAAAT
AACAACAATATGAATCACAATTAGTAAGGTTAGTTTACAAACGGAGGAAATAAATTCAAT
AAAGGGCATGGTAACAACAACGGAATGAGTAACAAGAAGTAAAATTAATGGAACGGTTAG
CAAAATAATTAAATCCCAAGCTAAGATAATTAAACTGGTATCTCCTCTGATGGATATTAT
GAAGGAAGTAGTAGCTAAATTGGCTAATAATATGATGTTAGCTAAATGTACAACTATCAA
TAATCATAACAAGGATCTCATTATATGATGCAAGACTAATCTAATCCTTATTAATGA


>TTHERM_00484731(protein)
MSFQNQEIHDDLNEMQKLTEAQEEQFKQQNDNDYDQVGTSGYQEIIKRSRENSIDSARSR
SRSINERKRNYNRQQNSNEEESPKMVNKVEVPVIKLDNQSGYRHARRLYIGNIPETINQE
YLSEWLYRSLEAAGGLQPSLPSENPIVKCEIDPKGRFAFTELRSIEETTALLQLDGIILW
HRQLRIRRPTEYEKFPKVQGQFEANIPKLNFDLFKTVGIVIIPTIVDDGPNKIFLANLPT
KMDELMILDELKLRDMGEIKAFHLVKDNQTNQSKGYAFFEFKDPSLTDNCIETLHGMQYA
GRTLTCKRSQIGGLGNKQMSTGNNKQNNNRNSNQQNNLGGNNNMQRQSFSSENIDSIQGQ
NQQGINEGSGFFPNYQSNTQGGGNNQNKGMNQNYQNNGNNHNNNNKRGRNFGNQNNSNNN
YYNNNGAGMNNGNNNNNGNNRRFQNNNNMNHNQQGQFTNGGNKFNKGHGNNNGMSNKKQN
QWNGQQNNQIPSQDNQTGISSDGYYEGSSSQIGQQYDVSQMYNYQQSQQGSHYMMQDQSN
PYQ