Identifiers and Description

Gene Model Identifier

TTHERM_00540340

Standard Name

CPH2 (homolog of CAP-H or BRN1 condensin gene)

Aliases

PreTt12192 | 70.m00188 | 3728.m00085

Description

condensin complex subunit 2; condensin subunit- kleisin

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF04394 ) Protein of unknown function, DUF536
• ( PF05786 ) Barren protein
• ( TIGR00690 ) DNA-directed RNA polymerase, omega subunit

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_18236.1	9.997093137033517e-262
	Description: hypothetical protein (975 aa)
Oxytricha	Contig18145.0.g34	0.000000000000020000882446601127
	Description: Condensin complex subunit 2
SGD	YBL097W	0.000030009396760408108
	Description: BRN1 Subunit of the condensin complex; required for chromosome condensation and for clustering of tRNA genes at the nucleolus; may influence multiple aspects of chromosome transmission
DictyBase	DDB_G0292066	0.00007000107212225429
	Description: ncapH on chromosome: 6 position 1141212 to 1144129

General Information

No Data fetched for General Information

Associated Literature

1. Ref:29237819: Howard-Till R, Loidl J (2018) Condensins promote chromosome individualization and segregation during mitosis, meiosis, and amitosis in Tetrahymena thermophila. Molecular biology of the cell 29(4):466-478

Sequences

>TTHERM_00540340(coding)
ATGAATGCAAACAAAAAGCAAACAAAAATTAGAAGGGCAAAAAGCACTTTGAAGAGTTCT
AGAAAGGAAAAATATAGCATAGAAGATTTAGAAACAGAAAAGGAAAGTAACATATCATCT
TATGATCTTGATTATTAGGATGATATTTGGGAGATTAATTCTAATTAAAAAGCAGCTGAA
ATATCTTTTTCTTAGAAAAAAAATGTAAGTGTGAATAGCAGTCTTAAAGGGAGAAATAAT
AGTCAGCTAGTTAAATCTGACGATTTAGCTATGAAGACTTCTAATAAACCTATCAGGAGA
GTTAACACAAGCATAAGCATGAGTTAGAGCTCTGTATAAATATAGGATGAAAGCATAGAT
TTGGATGCTGAAAGCGATCAAGAAAGTGATGATGATTCACATCTCACTCCAGAATAAAAA
TAACTAAAAGATAGATGGCTTCAAATATTCCAAAAAATATCTAAAAGTAGAATAAAGACG
GATGAAGCTTTTGATTTTGATGTAGAATAGGAACTTTAATTAGTTTTGTATGAGTGGAAA
GACTCAGGATGTATATTAGAGTGTATTTCCAAGCTCTATTCTATGAAAGTTGATAGACTA
TCAAAAGAGGCTTATCATTTATTAGCATGTATAGCAAGAGGATAAATAGGTGGAGACAAG
AGTAAAGAAATGGAAAATGAAGAATAAGAGGATGAAAGCAAGAATGAAGGAAATAAATAA
GACAGAAACGATTAAAAAAAAAAGATAGTTTCATTTGAAGAAAAATAAATCTAACAAGGA
TCTTTTGAAAATTTTGATCCGTTTATTGCTGGTTAAAAGCAGATAGAAAAGCCAGAAAAA
TTAATTGTTGATAAGTATGATATTCTTTTTGATCTAGATCCTCTATTTAGGAAGAAAAGC
TAGTATTTTGACGATACTAGCTCGGAAGGTCTTCTTCTTAATGTACTGGAAGTAGATAAA
GAGCTTTGTATAAATTTGTCTGAATTAGATGAGGCATTGGGCAAATAGTAAAAATTAGTT
TAAAGAGATTAAAAAAAATAGACTAAGTCAAATTATATGAAATTATTCACTTAAGAAGAA
TTTAAAAATAAATTCTCAGCTCCTGTTGAAGATTAGATTATCGATTTATTTCCAGAATTA
ATTGATTTTAAGATGTCAGTGATTGACGAAGTTTCTTAATAATTGCTATTTGATAATATT
TAAAGTTTAAACTCTGAGAATGATATTAAGATTCTAACTCAAAATAATAAAAAAATGGAA
ATCATGGATGAAAATTCTGCTTCTATAGTCAATTAAGTGCTTTAAAATGAGAATGATAAA
ATTTTATTAAACGAAATAAACCTAGCATATTAAATGAATGCTTTTACCTCATAAAATTTT
ATGTACAGAAACCTGAGTGACGATTCATTGTTTCAAAATGCATCTCAGTCTTCATAAAAC
AAAGAAGATTTTATTTTATCATAAATGTCTTAAAGTTACACGCCTGATAACAGTATTTTT
AAGAACACAAAGCAGATAAGATTCGATTTGAATGACGAATACTAAGGTTTTGATTCTTCA
AATGACTATGCAAATTATCATGATGAAAATCCATCAACTTAAGAAACAAAGCAAATTGAT
AATTCTTTACTTCATAATTCTTTAAACAAAGTAGGAGGAGGAGATAAAACAATATTCTCT
AATTTTCTCATGAATTTAAATTGGGGAGACCCTAAGCAATGGGATATACAAAAGCTGAGT
GCTAATAAAAGGAAAAAAATACGTTCAAAAAAATTGTAAGATGATCTATTACTTGGAGAG
ATAAAGGAAGATATGGAAGCTGAAGAATAAAATGAAAACATAGCCATGAATAACCAGTAT
GAAAGATTAACGAAGCCACAAAAATATATTGATTTTAGCCTAAATAATGGAAAAGAAGAA
AGCTATAAAGAAGTAATAGGCAAGAAATTTTAGAGATATAAGAGTAATTTAGGATTAAAA
TATGTAAAAATAAAGTAGAAAAGTACTATTCAAAAAGATTATAAAATTACCAGTGAGCAA
GTATTCTAAATAGGTTTAAAATACATAGAAAATACAAAATAAAGTAGAATAAAGGAATTT
ACTAGTGAATATGACAGTTAATTTGATATATTTTAGTAGAGCTAATAGAATTAAAATACA
AGCTAAAATGCTATTAATTAAAATGATGAATATTAAAATGAGTACGAAGCTATTGGCTTT
GATGATTTATATGATGAAATGGATGATAGATTTTACAATCCTTAGAAGTATAATAATTAA
AGAGATAATAGATTTTTTAACACACAAAGAGAAGGCTAAAGTCAATTTGATATTTAAATG
AATAACTCACCATACGGAAGATATCAATACCCTTTCTCTGCTAATAATAATTCACAAAGT
CTCTACACTCAAAATAAAACCCAAAACTTTTTTTCATAAACTATAAAAAGAAAGCCTGTG
AGAATTAGAGATTTAAAAGAAACAGTATGGTAGACTATGACTTAATAGAAGAGCAAAGAA
AATAACAGCTAATTAACCTAATTAAGTTAAATTGTATAAGAAAATTAAAATAAAAGAGGA
AAAAGAAAAAATAAAGCCAAGCTATCTGAAAATGAAGAATAGGAGTAAATTGAAAGTGCG
ATTACTCAAATTAATAGTGAAGATGTTTCTCTCAAGTTTAGTGATTTAATGCATTAATTA
CCAAATTCTCTTGGATAAGATAATTAAGCTTAGGGAGTTTCAGTCTAGAATTGCTTTATT
AGCATACTGCATTTGGCAAACGAAAAACATCTTAGACTTGTTGATCCAAGTCACACTGAG
TTAGAATTTTTTATTTTCTTGGATTAAACATTACAAGAAAATGAAAACTCATAAAACCTT
AGACGAAGCAAAATTTAAGAATCTTGA

>TTHERM_00540340(gene)
ATGAATGCAAACAAAAAGCAAACAAAAATTAGAAGGGCAAAAAGCACTTTGAAGAGTTCT
AGAAAGGAAAAATATAGCATAGAAGATTTAGAAACAGAAAAGGAAAGTAACATATCATCT
TATGATCTTGATTATTAGGATGATATTTGGGAGATTAATTCTAATTAAAAAGCAGCTGAA
ATATCTTTTTCTTAGAAAAAAAATGTAAGTGTGAATAGCAGTCTTAAAGGGAGAAATAAT
AGTCAGCTAGTTAAATCTGACGATTTAGCTATGAAGACTTCTAATAAACCTATCAGGAGA
GTTAACACAAGCATAAGCATGAGTTAGAGCTCTGTATAAATATAGGATGAAAGCATAGAT
TTGGATGCTGAAAGCGATCAAGAAAGTGATGATGATTCACATCTCACTCCAGAATAAAAA
TAACTAAAAGATAGATGGCTTCAAATATTCCAAAAAATATCTAAAAGTGTAAGAATTTAT
TTTTTATATTTACTATCTTAGTAAGTATAAAGTAAAGTTAAGACACATCATTATTTTTTA
AAACATTAAATACAAAGAGAATAAAGACGGATGAAGCTTTTGATTTTGATGTAGAATAGG
AACTTTAATTAGTTTTGTATGAGTGGAAAGACTCAGGATGTATATTAGAGTGTATTTCCA
AGCTCTATTCTATGAAAGTTGATAGACTATCAAAAGAGGCTTATCATTTATTAGCATGTA
TAGCAAGAGGATAAATAGGTGGAGACAAGAGTAAAGAAATGGAAAATGAAGAATAAGAGG
ATGAAAGCAAGAATGAAGGAAATAAATAAGACAGAAACGATTAAAGTATTCTTTAAAAAA
TCATTATTTTATATTTTAATCATTCAATTAATTAATAATTAGAAAAAAAGATAGTTTCAT
TTGAAGAAAAATAAATCTAACAAGGATCTTTTGAAAATTTTGATCCGTTTATTGCTGGTT
AAAAGCAGATAGAAAAGCCAGAAAAATTAATTGTTGATAAGTATGATATTCTTTTTGATC
TAGATCCTCTATTTAGGAAGAAAAGCTAGTATTTTGACGATACTAGCTCGGAAGGTCTTC
TTCTTAATGTACTGGAAGTAGATAAAGAGCTTTGTATAAATTTGTCTGAATTAGATGAGG
CATTGGGCAAATAGTAAAAATTAGTTTAAAGAGATTAAAAAAAATAGACTAAGTCAAATT
ATATGAAATTATTCACTTAAGAAGAATTTAAAAATAAATTCTCAGCTCCTGTTGAAGATT
AGATTATCGATTTATTTCCAGAATTAATTGATTTTAAGATGTCAGTGATTGACGAAGTTT
CTTAATAATTGCTATTTGATAATATTTAAAGTTTAAACTCTGAGAATGATATTAAGATTC
TAACTCAAAATAATAAAAAAATGGAAATCATGGATGAAAATTCTGCTTCTATAGTCAATT
AAGTGCTTTAAAATGAGAATGATAAAATTTTATTAAACGAAATAAACCTAGCATATTAAA
TGAATGCTTTTACCTCATAAAATTTTATGTACAGAAACCTGAGTGACGATTCATTGTTTC
AAAATGCATCTCAGTCTTCATAAAACAAAGAAGATTTTATTTTATCATAAATGTCTTAAA
GTTACACGCCTGATAACAGTATTTTTAAGAACACAAAGCAGATAAGATTCGATTTGAATG
ACGAATACTAAGGTTTTGATTCTTCAAATGACTATGCAAATTATCATGTATGTATAAATT
TCAGTTAAAACTTCTTCAATAAAATAGAAAATTGTAAAATATATTATAGGATGAAAATCC
ATCAACTTAAGAAACAAAGCAAATTGATAATTCTTTACTTCATAATTCTTTAAACAAAGT
AGGAGGAGGAGATAAAACAATATTCTCTAATTTTCTCATGTAAATTTTTAATTTATGTAA
TGTTTCTCAATAAAAATTTATTAAAAAGGAATTTAAATTGGGGAGACCCTAAGCAATGGG
ATATACAAAAGCTGAGTGCTAATAAAAGGAAAAAAATACGTTCAAAAAAATTGTAAGATG
ATCTATTACTTGGAGAGATAAAGGAAGATATGGAAGCTGAAGAATAAAATGAAAACATAG
CCATGAATAACCAGTATGAAAGATTAACGAAGCCACAAAAATATATTGATTTTAGCCTAA
ATAATGGAGTAATTTGTCAAAACATTAAAGATTAATTATAATTTATTTTCTAAACCAAAA
AGAAAGAAGAAAGCTATAAAGAAGTAATAGGCAAGAAATTTTAGAGATATAAGAGTAATT
TAGGATTAAAATATGTAAAAATAAAGTAGAAAAGTACTATTCAAAAAGATTATAAAATTA
CCAGTGAGCAGTACTAATTTTAATTATATTATGATAATATTTAAATATTTATTTTTTAAA
AGAGTATTCTAAATAGGTTTAAAATACATAGAAAATACAAAATAAAGTAGAATAAAGGAA
TTTACTAGTGAATATGACAGTTAATTTGATATATTTTAGTAGAGCTAATAGAATTAAAAT
ACAAGCTAAAATGCTATTAATTAAAATGATGAATATTAAAATGAGTACGAAGCTATTGGC
TTTGATGATTTATATGATGAAATGGATGATAGATTTTACAATCCTTAGAAGTATAATAAT
TAAAGAGATAATAGATTTTTTAACACACAAAGAGAAGGCTAAAGTCAATTTGATATTTAA
ATGAATAACTCACCATACGGAAGATATCAATACCCTTTCTCTGCTAATAATAATTCACAA
AGTCTCTACACTCAAAATAAAACCCAAAACTTTTTTTCATAAACTATAAAAAGAAAGCCT
GTGAGAATTAGAGATTTAAAAGAAACAGTATGGTAGACTATGACTTAATAGAAGAGCAAA
GAAAATAACAGCTAATTAACCTAATTAAGTTAAATTGTATAAGAAAATTAAAATAAAAGA
GGAAAAAGAAAAAATAAAGCCAAGCTATCTGAAAATGAAGAATAGGAGTAAATTGAAAGT
GCGATTACTCAAATTAATAGTGAAGATGTTTCTCTCAAGTTTAGTGATTTAATGCATTAA
TTACCAAATTCTCTTGGATAAGATAATTAAGCTTAGGGAGTTTCAGTCTAGAATTGCTTT
ATTAGCATACTGCATTTGGCAAACGAAAAACATCTTAGACTTGTTGATCCAAGTCACACT
GAGTTAGAATTTTTTATTTTCTTGGATTAAACATTACAAGAAAATGAAAACTCATAAAAC
CTTAGACGAAGCAAAATTTAAGAATCTTGA

>TTHERM_00540340(protein)
MNANKKQTKIRRAKSTLKSSRKEKYSIEDLETEKESNISSYDLDYQDDIWEINSNQKAAE
ISFSQKKNVSVNSSLKGRNNSQLVKSDDLAMKTSNKPIRRVNTSISMSQSSVQIQDESID
LDAESDQESDDDSHLTPEQKQLKDRWLQIFQKISKSRIKTDEAFDFDVEQELQLVLYEWK
DSGCILECISKLYSMKVDRLSKEAYHLLACIARGQIGGDKSKEMENEEQEDESKNEGNKQ
DRNDQKKKIVSFEEKQIQQGSFENFDPFIAGQKQIEKPEKLIVDKYDILFDLDPLFRKKS
QYFDDTSSEGLLLNVLEVDKELCINLSELDEALGKQQKLVQRDQKKQTKSNYMKLFTQEE
FKNKFSAPVEDQIIDLFPELIDFKMSVIDEVSQQLLFDNIQSLNSENDIKILTQNNKKME
IMDENSASIVNQVLQNENDKILLNEINLAYQMNAFTSQNFMYRNLSDDSLFQNASQSSQN
KEDFILSQMSQSYTPDNSIFKNTKQIRFDLNDEYQGFDSSNDYANYHDENPSTQETKQID
NSLLHNSLNKVGGGDKTIFSNFLMNLNWGDPKQWDIQKLSANKRKKIRSKKLQDDLLLGE
IKEDMEAEEQNENIAMNNQYERLTKPQKYIDFSLNNGKEESYKEVIGKKFQRYKSNLGLK
YVKIKQKSTIQKDYKITSEQVFQIGLKYIENTKQSRIKEFTSEYDSQFDIFQQSQQNQNT
SQNAINQNDEYQNEYEAIGFDDLYDEMDDRFYNPQKYNNQRDNRFFNTQREGQSQFDIQM
NNSPYGRYQYPFSANNNSQSLYTQNKTQNFFSQTIKRKPVRIRDLKETVWQTMTQQKSKE
NNSQLTQLSQIVQENQNKRGKRKNKAKLSENEEQEQIESAITQINSEDVSLKFSDLMHQL
PNSLGQDNQAQGVSVQNCFISILHLANEKHLRLVDPSHTELEFFIFLDQTLQENENSQNL
RRSKIQES