Identifiers and Description

Gene Model Identifier

TTHERM_00551090

Standard Name

RPT6 (26S proteasome regulatory subunit T6)

Aliases

PreTt29213 | 72.m00136

Description

RPT6 26S proteasome ATPase regulatory subunit 6

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

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External Links

Gene Ontology Annotations

Cellular Component

Molecular Function

Domains

  • ( PF00004 ) ATPase family associated with various cellular activities (AAA)
  • ( PF00005 ) ABC transporter
  • ( PF00158 ) Sigma-54 interaction domain
  • ( PF01202 ) Shikimate kinase
  • ( PF01926 ) 50S ribosome-binding GTPase
  • ( PF07724 ) AAA domain (Cdc48 subfamily)
  • ( PF07726 ) ATPase family associated with various cellular activities (AAA)
  • ( PF07728 ) AAA domain (dynein-related subfamily)
  • ( TIGR00635 ) Holliday junction DNA helicase RuvB
  • ( TIGR00678 ) DNA polymerase III, delta' subunit
  • ( TIGR01241 ) ATP-dependent metallopeptidase HflB
  • ( TIGR01242 ) 26S proteasome subunit P45 family
  • ( TIGR02237 ) DNA repair and recombination protein
  • ( TIGR02880 ) CbbX protein
  • ( TIGR02881 ) stage V sporulation protein K
  • ( TIGR02928 ) orc1/cdc6 family replication initiation protein

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Stentor Coeruleus SteCoe_21548 0
Description: None
WormBase WBGene00004506 9.997093137033517e-262
Description: locus:rpt-6 status:Confirmed UniProt:Q9XTT9 protein_id:CAB11558.1
Tetrahymena borealis EI9_07336.1 9.997093137033517e-262
Description: 26S proteasome subunit P45 family protein (396 aa)
DictyBase DDB_G0292382 9.997093137033517e-262
Description: psmC5 on chromosome: 6 position 1673522 to 1674865
Oxytricha Contig1022.1.g101 9.997093137033517e-262
Description: ATPase family associated with various cellular activities (AAA)
SGD YGL048C 9.997093137033517e-262
Description: RPT6 One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; bound by ubiquitin-protein ligases Ubr1p and Ufd4p; localized mainly to the nucleus throughout the cell cycle
WormBase WBGene00012933 9.997093137033517e-262
Description: locus:mib-1 status:Partially_confirmed UniProt:Q9U2C5 protein_id:CAB57896.3

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:21637855: Xiong J, Yuan D, Fillingham JS, Garg J, Lu X, Chang Y, Liu Y, Fu C, Pearlman RE, Miao W (2011) Gene network landscape of the ciliate Tetrahymena thermophila. PloS one 6(5):e20124

Sequences 

>TTHERM_00551090(coding)
ATGTCAGTAAGTTAAGGTGCAGGATTGAAGGCATTTTATCTTTCTAAGATTGAAGAGCTC
TCTTTGAAAGTTAATGAAAAGTCATAGAATATAAAACGTTTGGAGGCTTAAAGAAACGAA
TATAATAATCAAGTTCGTATGCTCAAAGAAGAATTTTACTCTTTATAATCACCTCACTCT
TATGTTGGTGAAGTTGTTAAGCCAATGGGAAAGAGCAAAGTTTTAGTTAAGATATCTCCT
GATGGCAAATATGTAGTTAATATAGATAAAAGCATTAAAATTGAAGATTGTTTACCAAAT
ACTCGTGTTGCTTTAAAAGGTGACTCTTATGTTCTTCACAAGCTTCTTCCCACTAAGGTT
GATCCTTTGGTTTCTCTCATGAAAGTCGAAAAGGTACCCGATTCTACTTATGATATGATC
GGTGGTCTTGATCAATAAGTTAAGGAAGTAAAGGAAGTTATTGAATTGCCAATTAAGCAT
CCTGAAATTTTTGAGTCTCTTGGTATTGCTTAACCTAAGGGTGTTCTCCTTTACGGACCT
CCTGGTACTGGTAAAACCCTTCTCGCCAGAGCTATTGCACATCATACAGATTGTACTTTT
ATTAGAGTTTCTGGTAGTGAATTGGTTTAGAAATATATTGGTGAAGGAGCAAGAATGGTC
AGAGAATTATTCGTCATGGCTAGATAACATGCTCCTTGTTTGATTTTTATTGATGAAGTC
GATTCTATCGGTGGTGCAAGAATTGATAGTGATAGAGGTGGTGACTCAGAAGTACAAAGA
ACTATGCTTGAACTTCTTAACTAACTTGACGGTTTTGAATCTACAAATAACATTAAAATT
ATCATGGCTACTAATCGTATTGATATATTAGATCCTGCTCTTCTTAGACCAGGTCGTATC
GATAGAAAGGTAGAGTTCCCTAATCCTAGTGTTGAGGCTAGATTAGAAATCTTATCAATC
CACTCAAAGAAAATGAATCTCATGAGAGGTATTAATTTAAAGGCTATAGCTGAAAAGATG
GGAGGAGCTTCTGGTGCAGAATCAAAGGCTGTATGTACTGAAGCTGGTATGTTTGCATTA
AGAGAAAGAAGAATTCATGTTACTCAAGAAGATTTCGAAATGGCTGTTTCAAAGGTTATG
AAAAAGGACTTAGAAAAAAATATGGCTCTTCGTAAATTATGGACATGA


>TTHERM_00551090(gene)
ATGTCAGTAAGTTAAGGTGCAGGATTGAAGGCATTTTATCTTTCTAAGATTGAAGAGCTC
TCTTTGAAAGTTAATGAAAAGTCATAGAATATAAAACGTTTGGAGGCTTAAAGAAACGAA
TATAATAATCAAGGTATATCATTAAGCGTTGATTTATTTAGTAGATTATAGATAAGAGCA
AAAATTTTCATAAAATAATCAAAAAGCTGGCTAATTACAGCAGTAAAAAAAGGCACAAGC
ACAAAATGCATAAAGCTTTTCTTAATTTGATTAATAAAATAATCTTGCCAATTTTTCATC
AAATAATTACAAATCTATTTTTAAAATGTTTAAAAGACAACAATATTTAATAAATAATTA
ACTTGAGATGAAAACAAAAATGCTTGATTTGTTTTGTAGTGATTGAATTTACCTTTACTA
CACTCAATAAATTGTTTGATTAATTTAAAATATCACAGCTTTTAAAATTATTTCTAAAAA
TTTTGTTTAACTTATAATAAATAAATAGTTCGTATGCTCAAAGAAGAATTTTACTCTTTA
TAATCACCTCACTCTTATGTTGGTGAAGTTGTTAAGCCAATGGGAAAGAGCAAAGTTTTA
GTTAAGGTAGAATATACAATTAAATACAATATTTTATTTTAGACAAAATAAAATATATAT
TAAATTTTTACTTTTGGTTTATGCAATATAAAAATAATAAATTCTTAAATGATTAGATAT
CTCCTGATGGCAAATATGTAGTTAATATAGATAAAAGCATTAAAATTGAAGATTGTTTAC
CAAATACTCGTGTTGCTTTAAAAGGTGACTCTTATGTTCTTCACAAGCTTCTTCCCACTA
AGGTTGATCCTTTGGTTTCTCTCATGAAAGTCGAAAAGGTACCCGATTCTACTTATGATA
TGATCGGTGGTCTTGATCAATAAGTTAAGGAAGTAAAGGAAGTTATTGAATTGCCAATTA
AGCATCCTGAAATTTTTGAGTCTCTTGGTATTGCTTAACCTAAGGGTGTTCTCCTTTACG
GACCTCCTGGTACTGGTAAAACCCTTCTCGCCAGAGCTATTGCACATCATACAGTAAATA
ATTATATTAGAAAATAAACAGTTGGAACCCTCCTATATTTATCACCAATATTTTATTTAA
AAATTTAAATAAATTAGAAGAAAAACGAACTAAAAAATAAATATTAATGTAAAAAAGCTC
TAGGTTTTTCTGAAATAAAATATTTTTAAAATAAATTTTAGAATTTTTGTTAAATTTATT
AGGGATTTAATTAAATTTTATAATTATGAGTTTATAAAAAGTATTTAGTAATAAAAATAG
AAAAAGAGCTAAAGAAAATTTTAAGAATTTAACTTGAAAATATAGTTTTACGAAATCAAT
TGAGATTTAAACAGTCAAAAAAAATAATAAATAATTTTTATTTCCAGAAAAAATTAATTG
TCTTATTATTTTAACTTAGCTAATTTATTTTTATTGAATAGGATTGTACTTTTATTAGAG
TTTCTGGTAGTGAATTGGTTTAGAAATATATTGGTGAAGGAGCAAGAATGGTCAGAGAAT
TATTCGTCATGGCTAGATAACATGCTCCTTGTTTGATTTTTATTGATGAAGTCGATTCTA
TCGGTGGTGCAAGAATTGATAGTGATAGAGGTGGTGACTCAGAAGTACAAAGAACTATGC
TTGAACTTCTTAACTAAGTAAATAAATTAATAAAAAATATAATTAAAAATGGTATTTTTA
ATTTTTTAAAATTTTTAAATAGCTTGACGGTTTTGAATCTACAAATAACATTAAAATTAT
CATGGCTACTAATCGTATTGATATATTAGATCCTGCTCTTCTTAGACCAGGTCGTATCGA
TAGAAAGGTAGAGTTCCCTAATCCTAGTGTTGAGGTAATTGATAAAACATGATATTTTTT
ATTTAATTATTAAGCATACTATTTATATTTAAAAAATAATTATAAATTTATAGGCTAGAT
TAGAAATCTTATCAATCCACTCAAAGAAAATGAATCTCATGAGAGGTATTAATTTAAAGG
CTATAGCTGAAAAGATGGGAGGAGCTTCTGGTGCAGAATCAAAGGTGAATAATAATTATT
TTATATTTTATTAATTAATATTTTTTTAAATATTTATTATTAGGCTGTATGTACTGAAGC
TGGTATGTTTGCATTAAGAGAAAGAAGAATTCATGTTACTCAAGAAGATTTCGAAATGGC
TGTTTCAAAGGTTATGAAAAAGGACTTAGAAAAAAATATGGCTCTTCGTAAATTATGGAC
ATGA


>TTHERM_00551090(protein)
MSVSQGAGLKAFYLSKIEELSLKVNEKSQNIKRLEAQRNEYNNQVRMLKEEFYSLQSPHS
YVGEVVKPMGKSKVLVKISPDGKYVVNIDKSIKIEDCLPNTRVALKGDSYVLHKLLPTKV
DPLVSLMKVEKVPDSTYDMIGGLDQQVKEVKEVIELPIKHPEIFESLGIAQPKGVLLYGP
PGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQHAPCLIFIDEV
DSIGGARIDSDRGGDSEVQRTMLELLNQLDGFESTNNIKIIMATNRIDILDPALLRPGRI
DRKVEFPNPSVEARLEILSIHSKKMNLMRGINLKAIAEKMGGASGAESKAVCTEAGMFAL
RERRIHVTQEDFEMAVSKVMKKDLEKNMALRKLWT