Identifiers and Description

Gene Model Identifier

TTHERM_00563990

Standard Name

HMGB5 (HMG box protein)

Aliases

PreTt08937 | 75.m00135 | 3721.m00017

Description

HMG box protein; HMG box family protein

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Cellular Component

• nucleus (IEA) | GO:0005634

Molecular Function

• DNA binding (IEA) | GO:0003677

Domains

• ( PF00505 ) HMG (high mobility group) box
• ( PF08858 ) IDEAL domain
• ( TIGR00019 ) peptide chain release factor 1

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

• ( SD03313 ) Macronucleus: none
• ( SD03314 ) Macronucleus: none
• ( SD03315 ) Macronucleus: TTHERM_00563990[Δ::NEO2]

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_14551.1	4.997755005759707e-41
	Description: hypothetical protein (258 aa)

General Information

No Data fetched for General Information

Associated Literature

1. Ref:31932604: Nabeel-Shah S, Ashraf K, Saettone A, Garg J, Derynck J, Lambert JP, Pearlman RE, Fillingham J (2020) Nucleus-specific linker histones Hho1 and Mlh1 form distinct protein interactions during growth, starvation and development in Tetrahymena thermophila. Scientific reports 10(1):168

Sequences

>TTHERM_00563990(coding)
ATGATAGCTCGTTCACTTTTCTAGACTAATAAATATTTTGCAAGTAAATTTTAACTTTTA
ACATTCCGTGATAATAAGTATGCGATTCCTAGCCCTCCTTCTAGGCCTGCATTTGCTTAA
ACTATCTTTAATCAACTTTTAAGAAACAAAGCAAAAGAAATTGGTTAGAAATAAGCAGAT
ATTAAGAAGAATGAACAATTATTTAAGTAATTAACAGAATAAGCGAAGGTTGAAAGAGAA
AATGCTTTAAAAAACTATGAAACAAGTCTTAAAGAATATGAAGCTAAATTCAGTATACCT
AAAAGGATTAAACCCGCCTTTTTCTATTACTATTTAGAAAAATACGATAAGACTGAAAAG
TTAACAGAAAGTGTGAAAAGGCTAAGTAAAGAATTCAAATAACTTTCTGAATAAGAACAG
AAGATATATAAAGAAAAAGCCGCTGAAGATAAAAAAAGATATTAAGATGAATGCGAAAAA
TTTGTAAAGCAGCATTAGGATTTAATAGTTCCATCATTGTATCCTTTGTAACCATTATCT
TTGTATGTTTCTGAATAATTTTCATAGAATCCTCAATCAACATTGAAAAAAATTGCATCA
TCTTGGAAATAGCTAAGCGAGGAATAAAAGAAATAATATGAAGAAAAGGTAATCAAAATT
AATGAAGAGTAGAAGTAAAAACTTGCTGAATTCTAAAAAAAGAATAATTTATCAGATGAA
GATATTAAGAATTTCAAGAAGAGAAAGCAAAGATCTAAATCTGTTGAATAAAAAGAAAGT
CAGAGCTAATGA

>TTHERM_00563990(gene)
ATGATAGCTCGTTCACTTTTCTAGACTAATAAATATTTTGCAAGTAAATTTTAACTTTTA
ACATTCCGTGATAATAAGTATGCGATTCCTAGCCCTCCTTCTAGGCCTGCATTTGCTTAA
ACTATCTTTAATCAACTTTTAAGAAACAAAGCAAAAGAAATTGGTTAGAAATAAGCAGAT
ATTAAGAAGAATGAACAATTATTTAAGTAATTAACAGAATAAGCGAAGGTTGAAAGAGAA
AATGCTTTAAAAAACTATGAAACAAGTCTTAAAGAATATGAAGCTAAATTCAGTATACCT
AAAAGGATTAAACCCGCCTTTTTCTATTACTATTTAGAAAAATACGATAAGACTGAAAAG
TTAACAGAAAGTGTGAAAAGGCTAAGTAAAGAATTCAAATAACTTTCTGAATAAGAACAG
AAGATATATAAAGAAAAAGCCGCTGAAGATAAAAAAAGATATTAAGATGAATGCGAAAAA
TTTGTAAAGCAGCATTAGGATTTAATAGTTCCATCATTGTATCCTTTGTAACCATTATCT
TTGTATGTTTCTGAATAATTTTCATAGAATCCTCAATCAACATTGAAAAAAATTGCATCA
TCTTGGAAATAGCTAAGCGAGGAATAAAAGAAATAATATGAAGAAAAGGTAATCAAAATT
AATGAAGAGTAGAAGTAAAAACTTGCTGAATTCTAAAAAAAGAATAATTTATCAGATGAA
GATATTAAGAATTTCAAGAAGAGAAAGCAAAGATCTAAATCTGTTGAATAAAAAGAAAGT
CAGAGCTAATGA

>TTHERM_00563990(protein)
MIARSLFQTNKYFASKFQLLTFRDNKYAIPSPPSRPAFAQTIFNQLLRNKAKEIGQKQAD
IKKNEQLFKQLTEQAKVERENALKNYETSLKEYEAKFSIPKRIKPAFFYYYLEKYDKTEK
LTESVKRLSKEFKQLSEQEQKIYKEKAAEDKKRYQDECEKFVKQHQDLIVPSLYPLQPLS
LYVSEQFSQNPQSTLKKIASSWKQLSEEQKKQYEEKVIKINEEQKQKLAEFQKKNNLSDE
DIKNFKKRKQRSKSVEQKESQSQ