Identifiers and Description

Gene Model Identifier

TTHERM_00630430

Standard Name

RRP62 (exosome component RRP6-2)

Aliases

PreTt06556 | 89.m00150 | 3831.m01451

Description

RRP62 3-prime-5-prime exonuclease

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Cellular Component

• intracellular anatomical structure (IEA) | GO:0005622

Molecular Function

• 3'-5' exonuclease activity (IEA) | GO:0008408
• nucleic acid binding (IEA) | GO:0003676

Biological Process

• nucleobase-containing compound metabolic process (IEA) | GO:0006139

Domains

No Data fetched for Domains

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_04330.1	9.997093137033517e-262
	Description: 3-5 exonuclease (729 aa)
Oxytricha	Contig8740.0.1.g10	1.9998745702418095e-48
	Description: 3-5 exonuclease
Stentor Coeruleus	SteCoe_7112	8.985825944049381e-37
	Description: None
DictyBase	DDB_G0278593	3.000842737734004e-34
	Description: exdl2B on chromosome: 3 position 240471 to 242531
SGD	YOR001W	4.998021988471165e-24
	Description: RRP6 Nuclear exosome exonuclease component; has 3-5 exonuclease activity; involved in RNA processing, maturation, surveillance, degradation, tethering, and export; has similarity to E. coli RNase D and to human PM-Sc1 100 (EXOSC10); mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay
WormBase	WBGene00000796	8.000124778438792e-23
	Description: locus:crn-3 status:Confirmed UniProt:G5EBX6 protein_id:CAA90108.1

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00630430(coding)
ATGAAAAATTACACAATTAAAGAGTTTTAACAATATAATCACAGTGTATTAAATCCCTTT
TAGCCTGAAAAGTATATTTTGATAGATACTTTAAATAAGCTGCAGGATTTAATTCCAATA
CTTTTAGAATAAACTAGGTTAGGAATAGATACAGAATAGAGCTTTGCCAAGACCTATGAA
GGATTTTTATGCTTGATACAAATTTCAACTGATTAAAATGACTATCTGATAGATGTTTTA
GGCATCAACAGCAAATAAGGAATTAATGAGTGTCTTTCTAAAGTTTTTTTGTGCAAAGAC
ATTATTAAAATTTTTTATGCTGGATAATAAGATATTTTATGGCTTAAGAGAGATTTTGAT
TTATCAGTAGTAAATTACTTCGATGTAAAAGAATGTGCAAGCTTCCTAAAAAAATCTGAT
GATAATTCACTTATTTAGCTGATTGATCGCTATTGCAATTACAAATTAGATAAGCAAAAG
AAAAAAGAGCTATAAGTTTCAGAGTGGTCAAATAGACCTTTAAGCAAAGAATAGTTAGAC
TATGCTGCTTTGGATTCTCATTACTTAATAAAAATTAGATATGAACTGTTGTGTGAGACT
ATATAAAGTGTCGGTTTTAAGAGAACTATTGAAGTCATTAACTAAATGCAGTAATAAACT
TTAAAGAAATATGAAAAGAAGAAGTTTGATTATTAGTACTTTTTTGATTTATTTTAGAAA
TAATTTAAGCATTAAGAGTTATATGCATCATAAATTGACAAGTAATCAGAAGTATACAGA
ATAATAAACGTAATATATTGTAGAATAGCCAAACTTAAAAATGAATATTCATAATTAAAT
AACTTAAATGCTAATAATTTGTTATTGGAACCTTCGCTTTTAGAACTAGCTTTTAAAATT
TATGATTTAAACAGTAATAAACTTGCTTTGTTGGAAGATTTAGACTTATAAACATTCTAA
AATATCAAATATCCCCAATCGCTTATATTTTTGTAAAGCTAAAGGGAGAAAATCATGTTA
ATTTTGAATTCATGGAATTAGAGTGAAGAAAAAAACAATTTATTATAAGAGTATGATAAA
TATGGATAAAAAAAGGCTAGCAGTCACACTGAAAAAGAAGAAAGGAAGCAGAAGAGAGCA
TAATAATTTGAGGAGTAGTTCTGCTTGAAAAAAGAACCATACGGAAATTGCTAAATTCTA
TCACCACTAGGTTTGAAACTTTGCAATTGTGATGAAAAAAAAGTTAAATGGTATCTCAAT
AAAGGACTAGCTACTTTAGTCAGTAGAGAGCCTTACACAATTATAAAATTAAATTTTTAG
CCTAATGGAAAGAATCATGAAGAATTAGAACAAGAAATTCATTTGAATGAAAACCAATTT
TATGCAAGCAAGAGAGAAACTGTTTGTGTAGTCTGTGGAAAAGATGAAAAATTCACTAAA
TATCATGTTATTCCCTCTATATACAGAACTCATTTTCCAAATAAATACAAAAGCCATAGA
TCTCATGACATTTTGTTATTATGTGTGAAATGTCACCAGAAAGCAGGAAAAAACGCAGAT
TTGTTAAAAGATTAACTATTGCAGTAATATAAAATAGAAAAACAGCAGTATTTTAAATAG
CAAAGCTTAAAATATATGGCTTAAAGAATGTATGCTAGTACTAAGTCATACTTAAAAAGC
AAAGAAAAAATGAATAAAGAAAATAGATAAAAGTGTAAAGAAAACATTAGACAATATTTC
GACGAATTGCTCAAAACACCTGATATTTAAAATAAGTTTCCTTAGTTAAAGGACAAACAA
TTTAAAGTCTCAACCACTGGAAAAATTAAAATTGATGAAGAATTTAGGAGTTTCTTTTCT
AATTTAGAAAAAGACTCTAAAAATATTAAAGATGAAGAAAAACAAAATGAGAGAATTTGG
GCTGGATAAAAAGTAGTTGAAAATTTGAAAACAGAAGATGACATTATTTTATTCATAAAA
ATGTGGAGACAGCACTTTTTAGATGTTATGCAACCAAAATATTTACCATTTGGATGGAAT
GTCAATCATAAATTTACAAGAGATTTTGGTAAAGAGTCTGTTTTCAATTAAATTGAAGGT
AATCAAACAGAAGATATCTCCTAACAAAGCCATATAACTGTTTCTGAAGGAATAAATTAG
CAACCATGA

>TTHERM_00630430(gene)
ATGAAAAATTACACAATTAAAGAGTTTTAACAATATAATCACAGTGTATTAAATCCCTTT
TAGCCTGAAAAGTATATTTTGATAGATACTTTAAATAAGCTGCAGGATTTAATTCCAATA
CTTTTAGAATAAACTAGGTTAGGTAACTTTTCAAATTTATTTATTTTTACATTGTTTATG
TAAATTATTTATAATATACAGGAATAGATACAGAATAGAGCTTTGCCAAGACCTATGAAG
GATTTTTATGCTTGATACAAATTTCAACTGATTAAAATGACTATCTGATAGATGTTTTAG
GCATCAACAGCAAATAAGGAATTAATGAGTGTCTTTCTAAAGTTTTTTTGTGCAAAGACA
TTATTAAAATTTTTTATGCTGGATAATAAGATATTTTATGGCTTAAGAGAGATTTTGATT
TATCAGTAGTAAATTACTTCGATGTAAAAGAATGTGCAAGCTTCCTAAAAAAATCTGATG
ATAATTCACTTATTTAGCTGATTGATCGCTATTGCAATTACAAATTAGATAAGCAAAAGA
AAAAAGAGCTATAAGTAAATAAATCAGTATTTATTTATATATATTTTTATTTTATTTATT
TTCCAAAAGGTTTCAGAGTGGTCAAATAGACCTTTAAGCAAAGAATAGTTAGACTATGCT
GCTTTGGATTCTCATTACTTAATAAAAATTAGATATGAACTGTTGTGTGAGACTATATAA
AGTGTCGGTTTTAAGAGAACTATTGAAGTCATTAACTAAATGCAGTAATAAACTTTAAAG
AAATATGAAAAGAAGAAGTTTGATTATTAGTACTTTTTTGATTTATTTTAGAAATAATTT
AAGCATTAAGAGTTATATGCATCATAAATTGACAAGTAATCAGAAGTATACAGAATAATA
AACGTAATATATTGTAGAATAGCCAAACTTAAAAATGAATATTCATAATTAAATAACTTA
AATGCTAATAATTTGTTATTGGAACCTTCGCTTTTAGAACTAGCTTTTAAAATTTATGAT
TTAAACAGTAATAAACTTGCTTTGTTGGAAGATTTAGACTTATAAACATTCTAAAATATC
AAATATCCCCAATCGCTTATATTTTTGTAAAGCTAAAGGGAGAAAATCATGTTAATTTTG
AATTCATGGAATTAGAGTGAAGAAAAAAACAATTTATTATAAGAGTATGATAAATATGGA
TAAAAAAAGGCTAGCAGTCACACTGAAAAAGAAGAAAGGAAGCAGAAGAGAGCATAATAA
TTTGAGGAGTAGTTCTGCTTGAAAAAAGAACCATACGGAAATTGCTAAATTCTATCACCA
CTAGGTTTGAAACTTTGCAATTGTGATGAAAAAAAAGTTAAATGGTATCTCAATAAAGGA
CTAGCTACTTTAGTCAGTAGAGAGCCTTACACAATTATAAAATTAAATTTTTAGCCTAAT
GGAAAGAATCATGAAGAATTAGAACAAGAAATTCATTTGAATGAAAACCAATTTTATGCA
AGCAAGAGAGAAACTGTTTGTGTAGTCTGTGGAAAAGATGAAAAATTCACTAAATATCAT
GTTATTCCCTCTATATACAGAACTCATTTTCCAAATAAGTAAATTTCATTTCCTTTCTCA
TAAAATATAAAATAGTTCGATGCATTAAAATAAAATTAAATAGATACAAAAGCCATAGAT
CTCATGACATTTTGTTATTATGTGTGAAATGTCACCAGAAAGCAGGAAAAAACGCAGATT
TGTTAAAAGATTAACTATTGCAGTAATATAAAATAGAAAAACAGCAGTATTTTAAATAGC
AAAGCTTAAAATATATGGCTTAAAGAATGTATGCTAGTACTAAGTCATACTTAAAAAGCA
AAGAAAAAATGAATAAAGAAAATAGATAAAAGTGTAAAGAAAACATTAGACAATATTTCG
ACGAATTGCTCAAAACACCTGATATTTAAAATAAGTTTCCTTAGTTAAAGGACAAACAAT
TTAAAGTCTCAACCACTGGAAAAATTAAAATTGATGAAGAATTTAGGAGTTTCTTTTCTA
ATTTAGAAAAAGACTCTAAAAATATTAAAGATGAAGAAAAACAAAATGAGAGAATTTGGG
CTGGATAAAAAGTAGTTGAAAATTTGAAAACAGAAGATGACATTATTTTATTCATAAAAA
TGTGGAGACAGCACTTTTTAGATGTTATGCAACCAAAATATTTACCATTTGGATGGAATG
TCAATCATAAATTTACAAGAGATTTTGGTAAAGAGTCTGTTTTCAATTAAATTGAAGGTA
ATCAAACAGAAGATATCTCCTAACAAAGCCATATAACTGTTTCTGAAGGAATAAATTAGC
AACCATGA

>TTHERM_00630430(protein)
MKNYTIKEFQQYNHSVLNPFQPEKYILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYE
GFLCLIQISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFD
LSVVNYFDVKECASFLKKSDDNSLIQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLD
YAALDSHYLIKIRYELLCETIQSVGFKRTIEVINQMQQQTLKKYEKKKFDYQYFFDLFQK
QFKHQELYASQIDKQSEVYRIINVIYCRIAKLKNEYSQLNNLNANNLLLEPSLLELAFKI
YDLNSNKLALLEDLDLQTFQNIKYPQSLIFLQSQREKIMLILNSWNQSEEKNNLLQEYDK
YGQKKASSHTEKEERKQKRAQQFEEQFCLKKEPYGNCQILSPLGLKLCNCDEKKVKWYLN
KGLATLVSREPYTIIKLNFQPNGKNHEELEQEIHLNENQFYASKRETVCVVCGKDEKFTK
YHVIPSIYRTHFPNKYKSHRSHDILLLCVKCHQKAGKNADLLKDQLLQQYKIEKQQYFKQ
QSLKYMAQRMYASTKSYLKSKEKMNKENRQKCKENIRQYFDELLKTPDIQNKFPQLKDKQ
FKVSTTGKIKIDEEFRSFFSNLEKDSKNIKDEEKQNERIWAGQKVVENLKTEDDIILFIK
MWRQHFLDVMQPKYLPFGWNVNHKFTRDFGKESVFNQIEGNQTEDISQQSHITVSEGINQ
QP