Identifiers and Description

Gene Model Identifier

TTHERM_00655870

Standard Name

RRM39 (RNA recognition motif-containing protein 39)

Aliases

PreTt03681 | 96.m00150

Description

RRM39 polypyrimidine tract-binding protein

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF00076 ) RNA recognition motif. (a.k.a. RRM,
  • ( PF08675 ) RNA binding domain
  • ( TIGR01649 ) hnRNP-L/PTB/hephaestus splicing factor family

Gene Expression Profile

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_18022.1 9.997093137033517e-262
Description: polypyrimidine tract-binding protein (871 aa)
WormBase WBGene00004207 0.000000000010004361180063202
Description: locus:ptb-1 status:Confirmed UniProt:Q8T3E6 protein_id:CAD30435.1
DictyBase DDB_G0284321 0.0000000029989608248573072
Description: DDB_G0284321 on chromosome: 4 position 1760065 to 1764027
Oxytricha Contig511.0.0.g1 0.00000030014504373857585
Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
SGD YIR009W 0.000030009396760408108
Description: MSL1 U2B component of U2 snRNP, involved in splicing, binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences 

>TTHERM_00655870(coding)
ATGTCTTAGGCAAATAAACTTCAAAAATCGCAGCCTGTTCAAATATAATAGCACTTAAAC
GGAAATCAAGCCAAGCAATCGTTATCTTCAGTTATGCAGTAGCAGCAATAAAAAATAAGT
GCTTAAGAATAGTCTTTGAAAAATGAAGATTAGGCTATGCACAGAACCCACATGAAGGCT
AATACAATCGAAAATCTATCACCTGTGTTACTTGTAATTTTCAATACTAACGAAGCTAAG
ACAAACTAGGATCTCTTTGACATGTTTTCGTCTTATGTGAGAGTGATTCGTGTTTTAATA
TTTGAAAGAAAAGAAAATAATACAAAGTGCTTTGTCGAAATGATGACATAATCTGAGGCT
ACTTATGTAAAAAACTAAATTTCCTTCTAGAAGACTAAGAATTTGTTAAAAAATTTACAA
GTTTATTATGCTTAAATCTCAACAATCGACTTGTAAAACCATTATTCAGAAGGCTAAGAC
TTTACTAGCTTCTATGCAACTCATCCTAATTTCACTTGTTAATACATTTAGGAAACTTAA
TAATACTCTCAGAACCCTATTTTGTAAAACAGCACCATCAACCCCAAATTAAGCAGTCAA
GCAGCTTTTTAAAATAGCTTCTTAAACCCAGGCAAAAATAATGTTCAATAATCTATTAAC
AGTCCTTCAGCTTTTTATAACAATTATAACCCAAATAACTAAAGTTTTGCTGGTCCTGCT
AATAATAAAACTGCAGGATTTGGAGCTCCTTACGTTAATTCTTAGCAATTTTTACCTAAT
CATGTACCAGCTGAAATGGACAATAATTTCGATTAATCACATTTTCTAGATGGATAAATT
CGTCCAAGCTCTATTTCTTCTATTGATTATCAAATGCAGTCAAATTTACATTTATCTCAA
TACAATCATACTTCAATTCACCCTCATTCTCAATACACCACCAATGGCGGTAACAGCGGT
AATCTAACAAGCAGACACACCATTCACGGAAATCCTAATATGCAACCTAATAACACTCCA
TTCGAATCCAAAATTTATTACACAACTCAATAGCCTCAACAATAGCAAAATATTAATTAA
CGCAACACTATGTCTTAATAGCTTTACAGAGATTTGCAAAAGAAGGAATAAGTTTTATCG
CATCACATTAATTAAAATATGTAGCAAAATATGCAAAAATCCGCTCTTCTTCTATCACCT
TATTTCAATGTCACTCCTGGCATAAATAAGCCAGAGATGATAAACAATCCACCTCCTATT
TCCTTGAACAGTAGCACTAACAGGAGTCCTTCATCCACCTCTTACTCAATAAATAACAAC
AACTTAAATAATGCTAATCAAATATAATATGACTCTGATGTTGATGAAAATGTCTAAGTC
AGTTAACCTTCAGCATTCAGAACTAAGTATCGTGATGTCTAATTTTTCAATGGCAACTCC
AGCAACGTAGGCTATTTAGAAGATGTTGATCTTTAGTAATAGCAAATGGGAGCTGACTAA
GAGGCTAAAAAAGTTCTATTTGTTAGACATCTTGACTTTCCTGATTTAAAAATATCTATG
CTTTATAACCTTTTTAGCAATTATGGAAATATTGTGAAAATTATTTTCATGAAGCAGAAG
AGACAAGCTCTGATAGAATTCGAAGAAACTTCATAAGCAACCGCAGCCAAAGAAAATTTA
AACAACTTGCCATACTACAATGCTTAAATTAAAATAGATTACTCCAAATATGACCAAATA
GACCTCCAAAAGAAGAAACTTCATTCTGGAGAAAATAACGAACAAGAATAAGTCCTGTAA
ATCCCTCAATAATGCTTCAGATATAAAAATAAAAAGGGAATTCCGCAGTACGCTCCTAAA
AGCACTCTCCATGTTTCTAACATCAAAAAAGAATTCTTCGACTACAACCTAATTTAAGAT
TTCTTTTCTTCTTCAGGTGCAAAAATAAAGATGCTAAAACTCATTCCTAATGAAAAAAAG
TAAATGTGTCTAATTCAATTTGAAACCCTTGATGATGCTCTAAGAGTAATATCAACTTTC
CACGATACACCTTTCCATGGTAGAAACCTGTGCATTTCATTCACGAAGAGTGCAAACTCA
ATATAGTAAGCTCCTGGATAATAAAATAATATCAATACTAACTTCTCTAGCTCTAATAAC
ATGAGCAACAATTTAGAATAATAATAGTAAATACTTATGAAATAGCAATAACAAATGCAA
AATTAACAATATAATATCAACATTTTGAACTAAAATTAACTTCTTATTTAACAATAGCAA
TATTAGAATCCCTAATATGGTCAAAACAACACATTCTAAATCAATAACTTTGCCAATAAT
AACAACAATACTCATGGACTTGCTGCTCAACAGTCAACTTTGTTTGGTTACGATCTTAGT
GATAACAATTATCACCAATACTATGATGAATACAATGACAGTGATGAAGATCCTTAAGTG
ACTAATTCTATTTAGAACTTAGGTATTTGA


>TTHERM_00655870(gene)
ATGTCTTAGGCAAATAAACTTCAAAAATCGCAGCCTGTTCAAATATAATAGCACTTAAAC
GGAAATCAAGCCAAGCAATCGTTATCTTCAGTTATGCAGTAGCAGCAATAAAAAATAAGT
GCTTAAGAATAGTCTTTGAAAAATGAAGATTAGGCTATGCACAGAACCCACATGAAGGCT
AATACAATCGAAAATCTATCACCTGTGTTACTTGTAATTTTCAATACTAACGAAGCTAAG
ACAAACTAGGATCTCTTTGACATGTTTTCGTCTTATGTGAGAGTGATTCGTGTTTTAATA
TTTGAAAGAAAAGAAAATAATACAAAGTGCTTTGTCGAAATGATGACATAATCTGAGGCT
ACTTATGTAAAAAACTAAATTTCCTTCTAGAAGACTAAGAATTTGTTAAAAAATTTACAA
GTTTATTATGCTTAAATCTCAACAATCGACTTGTAAAACCATTATTCAGAAGGCTAAGAC
TTTACTAGCTTCTATGCAACTCATCCTAATTTCACTTGTTAATACATTTAGGAAACTTAA
TAATACTCTCAGAACCCTATTTTGTAAAACAGCACCATCAACCCCAAATTAAGCAGTCAA
GCAGCTTTTTAAAATAGCTTCTTAAACCCAGGCAAAAATAATGTTCAATAATCTATTAAC
AGTCCTTCAGCTTTTTATAACAATTATAACCCAAATAACTAAAGTTTTGCTGGTCCTGCT
AATAATAAAACTGCAGGATTTGGAGCTCCTTACGTTAATTCTTAGCAATTTTTACCTAAT
CATGTACCAGCTGAAATGGACAATAATTTCGATTAATCACATTTTCTAGATGGATAAATT
CGTCCAAGCTCTATTTCTTCTATTGATTATCAAATGCAGTCAAATTTACATTTATCTCAA
TACAATCATACTTCAATTCACCCTCATTCTCAATACACCACCAATGGCGGTAACAGCGGT
AATCTAACAAGCAGACACACCATTCACGGAAATCCTAATATGCAACCTAATAACACTCCA
TTCGAATCCAAAATTTATTACACAACTCAATAGCCTCAACAATAGCAAAATATTAATTAA
CGCAACACTATGTCTTAATAGCTTTACAGAGATTTGCAAAAGAAGGAATAAGTTTTATCG
CATCACATTAATTAAAATATGTAGCAAAATATGCAAAAATCCGCTCTTCTTCTATCACCT
TATTTCAATGTCACTCCTGGCATAAATAAGCCAGAGATGATAAACAATCCACCTCCTATT
TCCTTGAACAGTAGCACTAACAGGAGTCCTTCATCCACCTCTTACTCAATAAATAACAAC
AACTTAAATAATGCTAATCAAATATAATATGACTCTGATGTTGATGAAAATGTCTAAGTC
AGTTAACCTTCAGCATTCAGAACTAAGTATCGTGATGTCTAATTTTTCAATGGCAACTCC
AGCAACGTAGGCTATTTAGAAGATGTTGATCTTTAGTAATAGCAAATGGGAGCTGACTAA
GAGGCTAAAAAAGTTCTATTTGTTAGACATCTTGACTTTCCTGATTTAAAAATATCTATG
CTTTATAACCTTTTTAGCAATTATGGAAATATTGTGAAAATTATTTTCATGAAGCAGAAG
AGACAAGCTCTGATAGAATTCGAAGAAACTTCATAAGCAACCGCAGCCAAAGAAAATTTA
AACAACTTGCCATACTACAATGCTTAAATTAAAATAGATTACTCCAAATATGACCAAATA
GACCTCCAAAAGAAGAAACTTCATTCTGGAGAAAATAACGAACAAGAATAAGTCCTGTAA
ATCCCTCAATAATGCTTCAGATATAAAAATAAAAAGGGAATTCCGCAGTACGCTCCTAAA
AGCACTCTCCATGTTTCTAACATCAAAAAAGAATTCTTCGACTACAACCTAATTTAAGAT
TTCTTTTCTTCTTCAGGTGCAAAAATAAAGATGCTAAAACTCATTCCTAATGAAAAAAAG
TAAATGTGTCTAATTCAATTTGAAACCCTTGATGATGCTCTAAGAGTAATATCAACTTTC
CACGATACACCTTTCCATGGTAGAAACCTGTGCATTTCATTCACGAAGAGTGCAAACTCA
ATATAGTAAGCTCCTGGATAATAAAATAATATCAATACTAACTTCTCTAGCTCTAATAAC
ATGAGCAACAATTTAGAATAATAATAGTAAATACTTATGAAATAGCAATAACAAATGCAA
AATTAACAATATAATATCAACATTTTGAACTAAAATTAACTTCTTATTTAACAATAGCAA
TATTAGAATCCCTAATATGGTCAAAACAACACATTCTAAATCAATAACTTTGCCAATAAT
AACAACAATACTCATGGACTTGCTGCTCAACAGTCAACTTTGTTTGGTTACGATCTTAGT
GATAACAATTATCACCAATACTATGATGAATACAATGACAGTGATGAAGATCCTTAAGTG
ACTAATTCTATTTAGAACTTAGGTATTTGA


>TTHERM_00655870(protein)
MSQANKLQKSQPVQIQQHLNGNQAKQSLSSVMQQQQQKISAQEQSLKNEDQAMHRTHMKA
NTIENLSPVLLVIFNTNEAKTNQDLFDMFSSYVRVIRVLIFERKENNTKCFVEMMTQSEA
TYVKNQISFQKTKNLLKNLQVYYAQISTIDLQNHYSEGQDFTSFYATHPNFTCQYIQETQ
QYSQNPILQNSTINPKLSSQAAFQNSFLNPGKNNVQQSINSPSAFYNNYNPNNQSFAGPA
NNKTAGFGAPYVNSQQFLPNHVPAEMDNNFDQSHFLDGQIRPSSISSIDYQMQSNLHLSQ
YNHTSIHPHSQYTTNGGNSGNLTSRHTIHGNPNMQPNNTPFESKIYYTTQQPQQQQNINQ
RNTMSQQLYRDLQKKEQVLSHHINQNMQQNMQKSALLLSPYFNVTPGINKPEMINNPPPI
SLNSSTNRSPSSTSYSINNNNLNNANQIQYDSDVDENVQVSQPSAFRTKYRDVQFFNGNS
SNVGYLEDVDLQQQQMGADQEAKKVLFVRHLDFPDLKISMLYNLFSNYGNIVKIIFMKQK
RQALIEFEETSQATAAKENLNNLPYYNAQIKIDYSKYDQIDLQKKKLHSGENNEQEQVLQ
IPQQCFRYKNKKGIPQYAPKSTLHVSNIKKEFFDYNLIQDFFSSSGAKIKMLKLIPNEKK
QMCLIQFETLDDALRVISTFHDTPFHGRNLCISFTKSANSIQQAPGQQNNINTNFSSSNN
MSNNLEQQQQILMKQQQQMQNQQYNINILNQNQLLIQQQQYQNPQYGQNNTFQINNFANN
NNNTHGLAAQQSTLFGYDLSDNNYHQYYDEYNDSDEDPQVTNSIQNLGI