Identifiers and Description

Gene Model Identifier

TTHERM_00657460

Standard Name

RRM40 (RNA recognition motif-containing protein 40)

Aliases

PreTt02130 | 97.m00116 | 3724.m00024

Description

RRM40 RNA recognition motif 2 in vertebrate RNA-binding protein

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF00076 ) RNA recognition motif
  • ( PF05764 ) YL1 nuclear protein
  • ( PF08512 ) Histone chaperone Rttp106-like, middle domain
  • ( TIGR01622 ) splicing factor, CC1-like family
  • ( TIGR01628 ) polyadenylate binding protein, human types
  • ( TIGR01661 ) ELAV/HuD family splicing factor

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_16245.1 9.997093137033517e-262
Description: RNA binding domain-containing protein (695 aa)
Oxytricha Contig14672.0.g47 1.9991939848149086e-44
Description: RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase WBGene00011043 2.9990874792167046e-33
Description: locus:rbm-28 status:Partially_confirmed UniProt:O62325 protein_id:CAB05579.2
Stentor Coeruleus SteCoe_16384 7.095474162284704e-23
Description: None
DictyBase DDB_G0270156 1.9994498063102785e-22
Description: DDB_G0270156 on chromosome: 1 position 4329080 to 4331994
SGD YPL043W 1.000116773704384e-19
Description: NOP4 Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs)

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences 

>TTHERM_00657460(coding)
ATGACTGACAAAAGTAAGAAAGTAGTTGAAAAACAAGAACAAGAAAACGATTAAGATAAG
AATTAAGCCCAATAAAAGAAGGGTAGAGTTATTATTAGAAATTTAATATTTGATATCAGT
GAGAAGCATCTTAAAGGTTTGTTGGGTAAGTATGGTGAAATTATTGAAATTAATATTCCA
GTCAACCCTTCAACAAACAAATCTAAGGGTTTTGCCTTTGTCTAATTTGCTAATAAAAAC
TGTGCATTGAAAGCTATAAATGAGTTAAATGGTACTTAATGGAAGGGTAGAAATATCGTT
TTAGATTTAGCTGTTTCCAAAGAAGAATTCAAAAACCATCAATAGCCATAAAATTAACAA
GATAAATAGTAATCTAAACAAAAAGCTAAAAAATCTGAATAAATTGAAGAGGAAGAAGGA
GATGACGATGAAAAAAAAATGGATGAAGAAGAAGAAAGTGAAGATGATGAAGATCAAGAA
GACGATGATGAAGAGGATGAAGACGAAGATGATGATGAAGAAGAGGAAGACGAAGATGAT
GATAAAAATAATTAAAATAAAAAGGGAAAGAATTAATAAGGATAAAAGAAATTATTTGAA
AATGAAGATTTATCCAAAACATGTTTTGTTAGAAATTTATCTTATGATTCTACTGATAAG
GATTTAAGAACCTTCTGCCAAAACTTTGGTAAAGTAGAAATGGCAAAGGTATGTATGAAT
CATGAAACAGGAAGCAACAAAGGTACTGGTTTTGTAAAATTCTAAGATGCATAAGTAGCT
CTTAAACTTATTGCAAAGAGTAATGAACTCAGTGAAAACTGTCTTTAACAAAAAAATAAA
AAAAATGCCAGCAACATTCATGATATATTTTCAGGAATAAGCGAACTTGATCTTGAAATG
AATGGAAGAAGAATAATTTTCTTGGAAGCTAAGAAAAGAGAAGAAGTTTCTAAAGTTATG
GAAGAGAAGCTTGAAAGAAATTCAATCACTTTAGATAAAGTTAAAACTTTAGATTAATTA
GAAAAGTTTGACAGATAAGGAAAGAGAAACGTTCATTTAGCCAAGCTAGGTATTTTCGAA
GAAGAAAAAAGCATGACTAATGAAGAAAAGGAAAAGAGACGTATTCACTTATAAGAAAAA
TTGAATAAGCTAAAAAACCCTAACAACTATGTATCCTCAACAAGAATTGCCCTTATGAAC
ATACCAAAAGACGAATTCTAAGAAGAAGATATTAGACTTTATGCTCAAGCAGCACTTATA
AAAGAACATGGTCAAGAATATTTTAAAAAATAAAATCCAATTAAATAGGTCTTATTGCTT
AGAGATAAGAATAAACTTGATAAGGATGGAGTACCTAAAAGCAGAGGTATTGGATTCATA
GAATTTAATACACATGAATAAGCACTTTCATTCTTGGAATATTGTGTAAATGATAAGCAA
AACTTTGAAAAGAAATACAAGAAAACACCTATTATTGAGTTTTCAATTGAAGATGCTAGA
AAAATGGCAAAAAAGAATAAATTATTAGAAAAAGTTAAATAAAAATAAGCAGAAAAGAAG
AAAGAAAAGAAAGAATTAACTGAAGAGGAATTAGAATCAAAGAAAAAAATTCTTAAAAAT
ACGAACGAAGCAGCAAAAATAAAGATTTAAAATATTCTTGATTAATCTAACTGCAGTGAC
ATGTCTCTTTATGAGGAAGGCAAGAAATTGTTGAAGGACATAAAGAGTAGAGGTATTAAA
TAAAGAATGGCCAAGCTACTAAGAAAGAAGTTCAATATTCAAAATGAAGATAATCAAAAG
TCTAATAAATTAGTAGAAGCTATTTCCAAACAAGAGGAAAAGATCAAAAATAAGAATTCT
AAGGAAGAAAAGAGAAAGCAATTATTGAAGTAGAAAGTATAAGAAGAAAAGAAGTAGAAA
GTAGCTGAATAAAAGAAGAAGCAAAAGGAAATCGATGATGAGCTTGATGTTGATGCATCT
GAACTTATTAAGGCTGTCTCTAAAGAATTAAAGAAAAATAAAATAAGAAGATAAAACTTG
GAAGACTACGATGAATTAGATGATGTAGTTGAAAAGCATATGTAAAAGAAAGTTAAAAAA
ATAAAGCAAGAAAGTAGTGCATTGTGA


>TTHERM_00657460(gene)
ATGACTGACAAAAGTAAGAAAGTAGTTGAAAAACAAGAACAAGAAAACGATTAAGATAAG
AATTAAGCCCGTATAAAATTATTTTACTTACTAGTAGATATATGACTTAATATTATTATT
TTATAAATCAGAATAAAAGAAGGGTAGAGTTATTATTAGAAATTTAATATTTGATATCAG
TGAGAAGCATCTTAAAGGTTTGTTGGGTAAGTATGGTGAAATTATTGAAATTAATATTCC
AGTCAACCCTTCAACAAACAAATCTAAGGGTTTTGCCTTTGTCTAATTTGCTAATAAAAA
CTGTGCATTGAAAGCTATAAATGTATTTATTTGACTTTAGCTTATAAAGTAGAATTTAGA
TTATTGATTAATCAATTTTAAATTAATTAAAAGGAGTTAAATGGTACTTAATGGAAGGGT
AGAAATATCGTTTTAGATTTAGCTGTTTCCAAAGAAGAATTCAAAAACCATCAATAGCCA
TAAAATTAACAAGATAAATAGTAATCTAAACAAAAAGCTAAAAAATCTGAATAAATTGAA
GAGGAAGAAGGAGATGACGATGAAAAAAAAATGGATGAAGAAGAAGAAAGTGAAGATGAT
GAAGATCAAGAAGACGATGATGAAGAGGATGAAGACGAAGATGATGATGAAGAAGAGGAA
GACGAAGATGATGATAAAAATAATTAAAATAAAAAGGGAAAGAATTAATAAGGATAAAAG
AAATTATTTGAAAATGAAGATTTATCCAAAACATGTTTTGTTAGAAATTTATCTTATGAT
TCTACTGATAAGGATTTAAGAACCTTCTGCCAAAACTTTGGTAAAGTAGAAATGGCAAAG
GTAACTAAATAAAGTATTATGTTGGTTCTAAAGTTTAATTTAATAAAATGATATTAGGTA
TGTATGAATCATGAAACAGGAAGCAACAAAGGTACTGGTTTTGTAAAATTCTAAGATGCA
TAAGTAGCTCTTAAACTTATTGCAAAGAGTAATGAACTCAGTGAAAACTGTCTTTAACAA
AAAAATAAAAAAAATGCCAGCAACATTCATGATATATTTTCAGGTATGTGCTATTTATTA
TTTTAATATTGTTTATTTATTTAAAAATTTAAATATTCATTTTGTTAATAGGAATAAGCG
AACTTGATCTTGAAATGAATGGAAGAAGAATAATTTTCTTGGAAGCTAAGAAAAGAGAAG
AAGTTTCTAAAGTTATGGAAGAGAAGCTTGAAAGAAATTCAATCACTTTAGATAAAGTTA
AAACTTTAGATTAATTAGAAAAGTTTGACAGATAAGGAAAGAGAAACGTTCATTTAGCCA
AGCTAGGTATTTTCGAAGAAGAAAAAAGCATGACTAATGAAGAAAAGGAAAAGAGACGTA
TTCACTTATAAGAAAAATTGAATAAGCTAAAAAACCCTAACAACTATGTATCCTCAACAA
GTATACTAACATTTATATTTTTATCACTTTGATATTAAAAATATTTTTAATTTCCAAAGG
AATTGCCCTTATGAACATACCAAAAGACGAATTCTAAGAAGAAGATATTAGACTTTATGC
TCAAGCAGCACTTATAAAAGAACATGGTCAAGAATATTTTAAAAAATAAAATCCAATTAA
ATAGGTAACAACAATAATTGCTTTTTAATTTTTGATTTAAAATTTTTTTAATTATATATA
TTAAGGTCTTATTGCTTAGAGATAAGAATAAACTTGATAAGGATGGAGTACCTAAAAGCA
GAGGTATTGGATTCATAGAATTTAATACACATGAATAAGCACTTTCATTCTTGGAATATT
GTGTAAATGATAAGCAAAACTTTGAAAAGAAATACAAGAAAACACCTATTATTGAGTTTT
CAATTGAAGATGCTAGAAAAATGGCAAAAAAGAATAAATTATTAGAAAAAGTTAAATAAA
AATAAGCAGAAAAGAAGAAAGAAAAGAAAGAATTAACTGAAGAGGAATTAGAATCAAAGA
AAAAAATTCTTAAAAATACGAACGAAGCAGCAAAAATAAAGATTTAAAATATTCTTGATT
AATCTAACTGCAGTGACATGTCTCTTTATGAGGAAGGCAAGAAATTGTTGAAGGACATAA
AGAGTAGAGGTATTAAATAAAGAATGGCCAAGCTACTAAGAAAGAAGTTCAATATTCAAA
ATGAAGATAATCAAAAGTCTAATAAATTAGTAGAAGCTATTTCCAAACAAGAGGAAAAGA
TCAAAAATAAGAATTCTAAGGAAGAAAAGAGAAAGCAATTATTGAAGTAGAAAGTATAAG
AAGAAAAGAAGTAGAAAGTAGCTGAATAAAAGAAGAAGCAAAAGGAAATCGATGATGAGC
TTGATGTTGATGCATCTGAACTTATTAAGGTAAATAATTAAACATTTTACTTAAGAATAT
TTATTGATTAATTTTAATTATTGTTTTATTAAAGGCTGTCTCTAAAGAATTAAAGAAAAA
TAAAATAAGAAGATAAAACTTGGAAGACTACGATGAATTAGATGTAAATTTTTAATAAAT
TTATTATTTTTTAAAATTATTTAATGTTAATAGGATGTAGTTGAAAAGCATATGTAAAAG
AAAGTTAAAAAAATAAAGCAAGAAAGTAGTGCATTGTGA


>TTHERM_00657460(protein)
MTDKSKKVVEKQEQENDQDKNQAQQKKGRVIIRNLIFDISEKHLKGLLGKYGEIIEINIP
VNPSTNKSKGFAFVQFANKNCALKAINELNGTQWKGRNIVLDLAVSKEEFKNHQQPQNQQ
DKQQSKQKAKKSEQIEEEEGDDDEKKMDEEEESEDDEDQEDDDEEDEDEDDDEEEEDEDD
DKNNQNKKGKNQQGQKKLFENEDLSKTCFVRNLSYDSTDKDLRTFCQNFGKVEMAKVCMN
HETGSNKGTGFVKFQDAQVALKLIAKSNELSENCLQQKNKKNASNIHDIFSGISELDLEM
NGRRIIFLEAKKREEVSKVMEEKLERNSITLDKVKTLDQLEKFDRQGKRNVHLAKLGIFE
EEKSMTNEEKEKRRIHLQEKLNKLKNPNNYVSSTRIALMNIPKDEFQEEDIRLYAQAALI
KEHGQEYFKKQNPIKQVLLLRDKNKLDKDGVPKSRGIGFIEFNTHEQALSFLEYCVNDKQ
NFEKKYKKTPIIEFSIEDARKMAKKNKLLEKVKQKQAEKKKEKKELTEEELESKKKILKN
TNEAAKIKIQNILDQSNCSDMSLYEEGKKLLKDIKSRGIKQRMAKLLRKKFNIQNEDNQK
SNKLVEAISKQEEKIKNKNSKEEKRKQLLKQKVQEEKKQKVAEQKKKQKEIDDELDVDAS
ELIKAVSKELKKNKIRRQNLEDYDELDDVVEKHMQKKVKKIKQESSAL