Identifiers and Description

Gene Model Identifier

TTHERM_00726340

Standard Name

RRP42 (Exosome complex exonuclease RRP42)

Aliases

PreTt21899 | 117.m00151

Description

RRP42 3-prime exoribonuclease family 1 protein

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Molecular Function

• 3'-5'-RNA exonuclease activity (IEA) | GO:0000175
• RNA binding (IEA) | GO:0003723

Biological Process

• RNA processing (IEA) | GO:0006396

Domains

• ( PF01138 ) 3' exoribonuclease family, domain 1

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_04623.1	4.000089512234839e-180
	Description: 3 exoribonuclease family, domain 1 containing protein (271 aa)
WormBase	WBGene00000254	4.000089512234839e-180
	Description: locus:bli-4 Endoprotease bli-4 status:Confirmed UniProt:P51559 protein_id:CCD70038.1
Oxytricha	Contig18372.0.g87	6.001122775063233e-17
	Description: 3 exoribonuclease family, domain 1
DictyBase	DDB_G0280251	0.0000020007268868677913
	Description: DDB_G0280251 on chromosome: 3 position 3165971 to 3166945
Tetrahymena borealis	EI9_17854.1	0.0000020007268868677913
	Description: hypothetical protein (555 aa)
WormBase	WBGene00009289	0.000008000552149328928
	Description: locus:exos-7 status:Confirmed UniProt:G5EDS8 protein_id:CAB07377.2
Tetrahymena borealis	EI9_12439.1	0.000008000552149328928
	Description: hypothetical protein (3247 aa)
SGD	YDR280W	0.0002999184360822198
	Description: RRP45 Exosome non-catalytic core component; involved in 3-5 RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp45p (PM/SCL-75, EXOSC9)

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00726340(coding)
ATGAACACAAAATCAAGCCCAGGATAAATTGAATTCATTCGCGATGGATTTAAAATAAAC
ATTAGAGGTGATGGTAGAAAGAATGATTAGAGCAGAGAGTATTTAATTTAAACAGGATAG
CTCAAACAAGCAAATGGATCAAGTTTTATTAGCTTAAATGATAACAGTGTAAATATTTAT
ACAGGAATCAAGGTAGAAATAGGTGAAACTGATAACGATGAAGGAAAAATTATCTTAAAG
ATAGAATCTGCTCAAAGAACTGAACAAAATAGAGATTAAGAAAATCATATTAATAGCGAT
AAGAACACTTTGATTTATTTAGAAGCCTTGCTAAATAAGTATCTGATTCAGAATATTTGT
AAAAAATCACTTTGCATAGTTGAAAAGAAAAAATGTTGGATTCTGAATATAGATGTTTTT
ATTTTGGAGTCAGTAGAAATAGCTTATTTAAATTTAATGGCTGCTGGTATTAATGCTGCC
CTTGAAGATTTGGTGTTACCTAAAATATCAATCACTCATAATAATTTAACAAATGAAGAC
GAAATTACTTTAATTGAAGAATAGTTTTAATCCTTTTCAATTTCAAGAGACTTTAAAATG
CCTAAAATCTTGCTTATTGGATAAATTGATAGGATTCTAGTTGGAGATCTTACTGTAGAT
GAATACTATTCAGTAGAAAATAAGTATATTGTTGTTGTTGATGTTTATGAAAACAAAATT
ATTTCAATTAAAAAAACTGGATCTGGTTTCTTACCTCCTGAAGATTATGCCAAAATAGTA
TAATTTGCTCTTTCTTCTGCCTTGAAAAAGTGA

>TTHERM_00726340(gene)
ATGAACACAAAATCAAGCCCAGGATAAATTGAATTCATTCGCGATGGATTTAAAATAAAC
ATTAGAGGTGATGGTAGAAAGAATGATTAGAGCAGAGAGTATTTAATTTAAACAGGATAG
CTCAAACAAGCAAATGGATCAAGTTTTATTAGCTTAAATGATAACAGTGTAAATATTTAT
ACAGGAATCAAGGTAGAAATAGGTGAAACTGATAACGATGAAGGAAAAATTATCTTAAAG
ATAGAATCTGCTCAAAGAACTGAACAAAATAGAGATTAAGAAAATCATATTAATAGCGAT
AAGAACACTTTGATTTATTTAGAAGCCTTGCTAAATAAGTATCTGATTCAGAATATTTGT
AAAAAATCACTTTGCATAGTTGAAAAGAAAAAATGTTGGATTCTGAATATAGATGTTTTT
ATTTTGGAGTCAGTAGAAATAGCTTATTTAAATTTAATGGCTGCTGGTATTAATGCTGCC
CTTGAAGATTTGGTGTTACCTAAAATATCAATCACTCATAATAATTTAACAAATGAAGAC
GAAATTACTTTAATTGAAGAATAGTTTTAATCCTTTTCAATTTCAAGAGACTTTAAAATG
CCTAAAATCTTGCTTATTGGATAAATTGATAGGATTCTAGTTGGAGATCTTACTGTAGAT
GAATACTATTCAGTAGAAAATAAGTATATTGTTGTTGTTGATGTTTATGAAAACAAAATT
ATTTCAATTAAAAAAACTGGATCTGGTTTCTTACCTCCTGAAGATTATGCCAAAATAGTA
TAATTTGCTCTTTCTTCTGCCTTGAAAAAGTGA

>TTHERM_00726340(protein)
MNTKSSPGQIEFIRDGFKINIRGDGRKNDQSREYLIQTGQLKQANGSSFISLNDNSVNIY
TGIKVEIGETDNDEGKIILKIESAQRTEQNRDQENHINSDKNTLIYLEALLNKYLIQNIC
KKSLCIVEKKKCWILNIDVFILESVEIAYLNLMAAGINAALEDLVLPKISITHNNLTNED
EITLIEEQFQSFSISRDFKMPKILLIGQIDRILVGDLTVDEYYSVENKYIVVVDVYENKI
ISIKKTGSGFLPPEDYAKIVQFALSSALKK