Identifiers and Description

Gene Model Identifier

TTHERM_00729230

Standard Name

IBD1 (Interactive BromoDomain Protein 1)

Aliases

PreTt07324 | 118.m00152 | 3739.m00074 | Brop-5

Description

bromodomain protein; Bromodomain containing protein. Member of the SWI/SNF- SAGA- SWR complexes and a putative HMT complex during vegetative growth. Member of the SAGA and SWR complex during conjugation at 5 hours.

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_17985.1 3.998941839720987e-159
Description: bromodomain containing protein (274 aa)
Oxytricha Contig18584.0.g108 6.000354955737408e-39
Description: Bromodomain
DictyBase DDB_G0270170 0.0000000000000030004923591262316
Description: DDB_G0270170 on chromosome: 1 position 4360881 to 4366105
Stentor Coeruleus SteCoe_26039 0.00000000000003442477108469977
Description: None
SGD YGR252W 0.0000000000008001317446409227
Description: GCN5 Acetyltransferase, modifies N-terminal lysines on histones H2B and H3; acetylates Rsc4p, a subunit of the RSC chromatin-remodeling complex, altering replication stress tolerance; catalytic subunit of the ADA and SAGA histone acetyltransferase complexes; founding member of the Gcn5p-related N-acetyltransferase superfamily; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay
WormBase WBGene00017423 0.000000000006001570085597868
Description: status:Confirmed UniProt:O76561 protein_id:CCD69431.1

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:31664892: Saettone A, Ponce M, Nabeel-Shah S, Fillingham J (2019) RACS: rapid analysis of ChIP-Seq data for contig based genomes. BMC bioinformatics 20(1):533
  2. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences 

>TTHERM_00729230(coding)
ATGTCAGGTTTTAAGTCTTCTCTTAAATTAAACTAGCATACTAATATAGGAAAAGAAGAA
CTCAAAAAGCTAAATCAAATGCTAAGTTAGCTCTTGCAAAACAATGATTCAATTGAATTT
AGATAAGCAGTTGATTGGAAAGCTTTGGGTTTGATGGACTATCCAAATATTATTAAATAC
CCCATGGATTTAGGCACATGTAAAGAAAAGTTAAAGAATAATGAATACAACTTCGTCGAA
GATTGCCTTGATGATATATAAATAGTTTGGGATAACTGTAAAAATTATAATGCTGAAGGA
TCTTGGATTTATAAATTAGCAGAAAAGTTGGAAAAGCACTTTAAAAATATGATTAAGAAT
TATCTCCCTTCCATATAATTTATGAATGCTGTAGTCAAAAAGGAAAAGCTCTCCTAGATG
AAGATTAATCAAGATGAGAATAGTTCATCTCAAAATGGAGACTAACCAACTCCAGCTAAT
AATACAACTAATGGAAACAAAAATAATGATGCAAATAATGGTACAAGCTAGAATTAAAAT
TAAATATATCAAGAAGAAGAAGCCAGTGAATCTATAACATCTTAAGATAAAATATTATTC
TCCTAGAAAATAAAGATGCTACCCACTGAATAGCTCGGTATGATAGTACTTATGATTTAG
AATAGTGCTTCTTAAGCATTTAAAGATATTGATAAAGAAAAATGTTAGATTCTAGTAGAC
TAAATAGATCCAGAAACATTTAAGAAAATTAATCAGTAAATCGATTTATGGAATGTTAGT
ACTGAAACTACTACAAAGAGAGTGAAGATTTGA


>TTHERM_00729230(gene)
ATGTCAGGTTTTAAGTCTTCTCTTAAATTAAACTAGTAATATTGATACCATTTTTTAGAT
TTAGCATAAATAAATTTATTTTATAGCAATTCAATGCTTAAAGAGAGCGAAATTAGTTCA
AATGCAGCTTATTAACTTTTTAATATAATGACCATCATTATTGATTTTTATTTTTAAAAA
TAGGCATACTAATATAGGAAAAGAAGAACTCAAAAAGCTAAATCAAATGCTAAGTTAGCT
CTTGCAAAACAATGATTCAATTGAATTTAGATAAGCAGTTGATTGGAAAGGTAATTTTGA
ATTAATTTTAGAGATTTGGCAAATTTAACTCTATTATTTTGAGATATTTCAAATAATCGA
TTTAAATAGATCAATTAAATTTTGCATACATAAATTATTTTGTGAGTACTAATCAAAATT
GATAATAAAATAAGCTTTGGGTTTGATGGACTATCCAAATATTATTAAATACCCCATGGA
TTTAGGCACATGTAAAGAAAAGTTAAAGAATAATGAATACAACTTCGTCGAAGATTGCCT
TGATGATATATAAATAGTTTGGGATAACTGTAAAAATTATAATGCTGAAGGATCTGTAAT
TAATTAAATTTCAATTATTTAATATTCTTTTAAAAAGAGTTTTTTTTAATTCAAAGATAT
TTTCTAATATTTTTAAAGAAAACAAAAATAATATAATCAAATTAAATCAAATCAATTACA
ATTATACAACCAAAAACAAACCCCTTTTATCTATTTATTTATAATAGCTGTTCTGAAATT
ATTATTTTTATTTTAAATAAAAATATTATTAACTGATAATAAAAATTTTTTAAATTTAAG
ATATTTTTGATTTTTTATAAAGCTAATATTTCGCAGTAACAAAATAAATGGATTTAAATA
TTTTATATATATTTATATCAAGCTTTAAAAATAAAATAAATTAATCAATGCTAATTTTCA
AGTACCAATAAAAAATGAATAACTAAAAAATAAATTTTATAATTTTAAATGTAGGTTTAT
ATAAAAAAATAAAATCAAAAGCAAAGTATAAATCTATTAGCAAACAATTTTTAAAAACAT
GATTATTTGATTAATGAGAAGATTTTCACAAGATTTAATTTACAAAATAAATATATTTAA
AATAATATTAAAATGAATTTATTTTTCATTTTTTTCAAATAATTTTTGAATGTATTTTGG
TTTTATGTAAAAATAAAATTATTATGATCAAAACCATACTGGTTTTAGTAAAAGAAGTTG
AAAAAATTTTTCTGTTTTTTATTTTTAAAAATTGTTTTTTTTTCTTTAAAAACTTGAAGA
AAAATATTTAAAATTATTTAATATCTCCTTGTTAATTAATAAATATTTATAATAATTTTT
AAAATAGTGGATTTATAAATTAGCAGAAAAGTTGGAAAAGCACTTTAAAAATATGATTAA
GAATTATCTCCCTTCCATATAATTTATGAATGCTGTAGTCAGTAAAAAATTAGTTTTTTG
ATAATGATTTATAGCTTTTAACTTGAATTTTGTGATTAAAATTTTTTTCATTAAATAGAA
AAGGAAAAGCTCTCCTAGATGAAGATTAATCAAGATGAGAAGTATCTTATTCATTTATTA
TTTAAGAATTAATGAATAATTTATTTTATAATTAATTATATAAGTAGTTCATCTCAAAAT
GGAGACTAACCAACTCCAGCTAATAATACAACTAATGGAAACAAAAATAATGATGCAAAT
AATGGTACAAGCTAGAATTAAAATTAAATATATCAAGAAGAAGAAGCCAGTGAATCTATA
ACATCTTAAGATAAAATATTATTCTCCTAGAAAATAAAGATGCTACCCACTGAATAGCTC
GGTATGATAGTACTTATGATTTAGAATAGTGCTTCTTAAGCATTTAAAGATATTGATAAA
GAAAAATGTTAGATTCTAGTAGACTAAATAGATCCAGAAACATTTAAGAAAATTAATCAG
TAAATTATTATAATTTGATATTAATTATTAGCTGATTTTATAGAAAAAATATAATTTAAA
TTTTATACTATTTTGAAAATATAAGTTTTTATTAATTTAATTATTATAACTAGGTAAATC
GATTTATGGAATGTTAGTACTGAAACTACTACAAAGAGAGTGAAGATTTGA


>TTHERM_00729230(protein)
MSGFKSSLKLNQHTNIGKEELKKLNQMLSQLLQNNDSIEFRQAVDWKALGLMDYPNIIKY
PMDLGTCKEKLKNNEYNFVEDCLDDIQIVWDNCKNYNAEGSWIYKLAEKLEKHFKNMIKN
YLPSIQFMNAVVKKEKLSQMKINQDENSSSQNGDQPTPANNTTNGNKNNDANNGTSQNQN
QIYQEEEASESITSQDKILFSQKIKMLPTEQLGMIVLMIQNSASQAFKDIDKEKCQILVD
QIDPETFKKINQQIDLWNVSTETTTKRVKI