Identifiers and Description

Gene Model Identifier

TTHERM_00773330

Standard Name

RPS13 (Ribosomal Protein of the Small Subunit 13)

Aliases

PreTt04424 | 128.m00102 | 3676.m00027

Description

RPS13 40S ribosomal protein S13; Homolog of yeast RPS13- human RPS13- bacterial RPS15;

Genome Browser (Macronucleus)

Full Screen View

No Genome Browser Data Present

Genome Browser (Micronucleus)

Full Screen View

No Genome Browser Data Present

External Links

• Uniprot
• Alphafold

Gene Ontology Annotations

Cellular Component

• intracellular anatomical structure (IEA) | GO:0005622
• ribosome (IEA) | GO:0005840

Molecular Function

• structural constituent of ribosome (IEA) | GO:0003735

Biological Process

• translation (IEA) | GO:0006412

Domains

• ( PF00312 ) ribosomal protein S15
• ( PF08069 ) Ribosomal S13/S15 N-terminal domain

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

No results were calculated for this gene in GeneMania.

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source	Identifier	Score
Tetrahymena borealis	EI9_17649.1	4.001242549923285e-107
	Description: ribosomal protein S15 containing protein (200 aa)
SGD	YDR064W	2.0007889996237956e-71
	Description: RPS13 Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S15 and rat S13 ribosomal proteins
WormBase	WBGene00004482	6.997942222381785e-66
	Description: locus:rps-13 40S ribosomal protein S13 status:Confirmed UniProt:P51404 protein_id:CCD63229.1
Oxytricha	Contig5219.0.1.g44	6.001629673589058e-65
	Description: Ribosomal S13/S15 N-terminal domain
DictyBase	DDB_G0284533	7.997908857293895e-55
	Description: rps13 on chromosome: 4 position 2127182 to 2127908
Stentor Coeruleus	SteCoe_23264	1.462486227251231e-31
	Description: None

General Information

No Data fetched for General Information

Associated Literature

1. Ref:21205638: Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science (New York, N.Y.) 331(6018):730-6

Sequences

>TTHERM_00773330(coding)
ATGGGTCGTATGCAAATGAAAGGTAAAGGTAAGGGTATCTCCGGAAGTGCCCTCCCCTTC
AAGAGAAGATCTCCTAAGTGGCTCCACATGACTCCTTCTACTGTCGTTGACCTCTCCGTC
AAGTTAGCCAAGAAGGGTCTTACCCCCTCTCAAATTGGTGTTATCCTCAGAGATCAACAC
GGTATTCCCCAAGTTAGATTCTTGACTGGTTAAAAGATCCTCAGAATCCTCAAGAAGAAC
GGTTGTGCTCCTCAACTCCCCGAAGATCTTTACTTCTTGATCAAGAAGGCTCTCTCCATC
AGAAAGCACTTGGAAAAGAACAGAAAGGACAAGGACTCTAAGTACAGACTTATTCTTGTT
GAATCTAGAATCCACAGACTCTCTAGATACTACAAGCTCAACCAAAAGCTCCCCCCTAAA
TGGAAATACAACGCTCAAACTGCTTCTGCTTTAGTTCAATGA

>TTHERM_00773330(gene)
ATGGGTCGTATGCAAATGAAAGGTAAAGGTAAGGGTATCTCCGGAAGTGCCCTCCCCTTC
AAGAGAAGATCTCCTAAGTGGCTCCACATGACTCCTTCTACTGTCGTTGACCTCTCCGTC
AAGTTAGCCAAGAAGGGTACACATTTTTTCAAATATTTTTATTATAAATCATCAATCAAT
CAATATTAACATAAATTCGCTCATTTTATATTTCGAAAGCTATTCAAACATCAAAACTAA
ACGACTGCTACGTTAATAAATTACATTAAAGTTAAAAGTATAAAAATTATTAACTAAAAT
CTATTTTAAGAAAAGAATAAACACTATAGTAATTATAAACATAAAATGCTTTAAATATTA
AATAAAAAATTAACACCTTCAAAAATAGATTGAGCCTTTACATTAGCTCAAAATGGTATT
TAATCAAAATGTGAATAATGAGGTAAATAATCTAAACAATTTTTGAATAAATTCAAAAAA
AGTATTTTCGCTAAAGGTCGTATCATCAGCGATCACGAGCGTTTCATTTACCTTATCTAC
TTCTTCCAGGTTCTTCAAATACCTCCAAGAATTAATCAAATAAATAATTAGCATTCTCTC
TCTCTAATTTTAGATAGGATTAGACGTTAACCTGATGATAATAGTTGCACTAAAAATTAA
ATTTAGGAATTGCAAGCAATTAAAATTTATTAAAGCTGGTTTCCTTTAGCGATTAGAGAA
TAAGTTGAAATAAGGAAGATCATAGCTATCCATCTGAATACATTTACTATTTATATCTTA
AGAAATAGTATTTGAAGTATAAATTTAGTTCCAAAAGCTAAATAATAACTAAATAAATAA
ATAAACAACCAAACAAAATACAGATTTAGCGAAAGATATGTTTTAAATAAATATTAAATT
CACTAAATATTTTAAATGCCGTTAAATGGTAGGCAAGATATAATTAACTAAATAAATCGC
CAATAGTATATGAATTGCGAATTAAAGATTTATAATACTAAATTTGTGCAATACTTCCAA
AAGATTTATGAATTCTTATTGAAATTTTTATTGGATTTGAATGTTAAAGAGCATAAAGCT
ATATATAATCCATCCTTAACAGTTAAGAATAGCTTATCAACAAATTTTGAAATAAAAATG
AATAAATGAATGAAAAATAGTTGAGAATATTTTTTGATAAATTTGATAAATAGTTAGTTG
TAAAATAATAAGAAAGCAGATCATGTTATTTATTGTTTGATAGCTTGCTACCCAAACAAA
ATGAGCTGATTGATTAGAATGATTTAATAAATAAATAAAATATTTATCTTCTCTTAATAT
CAAATAGGTCTTACCCCCTCTCAAATTGGTGTTATCCTCAGAGATCAACACGGTATTCCC
CAAGTTAGATTCTTGACTGGTTAAAAGATCCTCAGAATCCTCAAGAAGAACGGTTGTGCT
CCTCAACTCCCCGAAGATCTTTACTTCTTGATCAAGAAGGCTCTCTCCATCAGAAAGCAC
TTGGAAAAGAACAGAAAGGACAAGGACTCTAAGTACAGACTTATTCTTGTTGAATCTAGA
ATCCACAGACTCTCTAGATACTACAAGCTCAACCAAAAGCTCCCCCCTAAATGGAAATAG
TAAAAATTTAATTTAATTAATTAATTCTACTTTAACTTAATTCATAAAAAATTAAATATT
AACAACAACTTTTATAAAAAATAGCAACGCTCAAACTGCTTCTGCTTTAGTTCAATGA

>TTHERM_00773330(protein)
MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQH
GIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILV
ESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ