Identifiers and Description
Gene Model Identifier
TTHERM_00853150
Standard Name
RDR1
(RNA-Dependent RNA polymerase 1)
Aliases
PreTt01214 | 150.m00106 | 3834.m00380
Description
RDR1 RNA-dependent RNA polymerase RdRP2; RNA-Dependent RNA polymerase; associated with RNA silencing; RNA-dependent RNA polymerase, eukaryotic-type
Genome
Browser (Macronucleus)
No Genome Browser Data Present
Genome Browser (Micronucleus)
No Genome Browser Data Present
External Links
Gene Ontology Annotations
Cellular Component
Domains
- ( PF05183 ) RNA dependent RNA polymerase
Gene Expression Profile
GeneMania
No results were calculated for this gene in GeneMania.
Tetrahymena Stock Center
- ( SD02508 ) Micronucleus: neo2 into RDR1
- ( SD02509 ) Micronucleus: neo2 into RDR1
- ( SD02510 ) Micronucleus: neo2 into RDR1
- ( SD02511 ) Micronucleus: neo2 into RDR1
- ( SD02512 ) Macronucleus: HA-FLAG tag of RDR1
- ( SD02513 ) Macronucleus: HA-FLAG tagged RDR1 with neo3 in flank
- ( SD02514 ) Macronucleus: HA-FLAG tagged RDR1 with neo3 in flank
- ( SD02515 ) Macronucleus: HA-FLAG tagged RDR1 with neo3 in flank
Homologs
No Data fetched for Homologs
General Information
No Data fetched for General Information
Associated Literature
- Ref:22706992: Talsky KB, Collins K (2012) Strand-asymmetric endogenous Tetrahymena small RNA production requires a previously uncharacterized uridylyltransferase protein partner. RNA (New York, N.Y.) 18(8):1553-62
- Ref:20622019: Talsky KB, Collins K (2010) Initiation by a eukaryotic RNA-dependent RNA polymerase requires looping of the template end and is influenced by the template-tailing activity of an associated uridyltransferase. The Journal of biological chemistry 285(36):27614-23
- Ref:19451546: Lee SR, Talsky KB, Collins K (2009) A single RNA-dependent RNA polymerase assembles with mutually exclusive nucleotidyl transferase subunits to direct different pathways of small RNA biogenesis. RNA (New York, N.Y.) 15(7):1363-74
- Ref:19656801: Couvillion MT, Lee SR, Hogstad B, Malone CD, Tonkin LA, Sachidanandam R, Hannon GJ, Collins K (2009) Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila. Genes & development 23(17):2016-32
- Ref:17603500: Lee SR, Collins K (2007) Physical and functional coupling of RNA-dependent RNA polymerase and Dicer in the biogenesis of endogenous siRNAs. Nature structural & molecular biology 14(7):604-10
Sequences
>TTHERM_00853150(coding)
ATGATTGAACAATCTATAGAAGAGGAAAAAATCATATGCTGTATAGGCTATATAAATGGA
AAGATAACTTCTAAAAACTTTACTACCTCATTATGCTTTGCATCAATATAAAAATATCTT
TAAGAGCAACAACATAGATTTAAAAGCATTAAATGTGTCTCTATTTATACTCCAAAAAAG
GAGCAATAGTAGATTGGTTTAGATACCATTGATGATGTTAAGGAAAAAATAAAAGAGATA
CAGAAATCTATTGATCATAATTATTTGAATATACCTCAACACCTGAAAGAAGAGAGATAT
AGAGTAAACTATAAAAGCTTAAATTTTTAGGAAGGTTAATAGTCTTTGGATAATGATGAT
GATAGCAATTTACTTGGTAGTGAATATTAGTTTTTAAAAAACTTTATTACAAAAGAAAAT
GATGATATTCATCTGAAGGAAGAAATGGCTAGCTTTAATAAAATAGAAAGCTTTTGTTAA
AATGTATTAAAGAACTCTAAAAATGAGTCTAAAATAAATACTGTAAACTAATAAAAAGAT
TAGTATGCAAGGATAAATAGCTGGATTATAATTTTAAGTGGAACGGAATAGGATTTAGAA
GTTCTGAACGATTCAAAGATTGATGTAAAGACAAAACATGAAAAATATTACTTCTTTTTA
AAAACAAAACATAATGACAACGAAAAAAAAAATTATTTGAAAATTTGTACTGATGAATTA
TCGAATTATGCTAAGGAATAGATGAATTTTGTAAATATAAAATTGCTTCAAGTTAGTTTA
GGGATATTTGAATTATACGGCGGTGCTTTATACTACAATTGTTAGTTTTAATTTGAAGAA
AACATAGACTATGTAAACACAATCAGCATCTATATGTAAAATGATGAATCAGAGAGCAAG
TAAAAATAGTAATCGGTATCTATTGTGTTAGCATATAATGATTATTAGCTAAAAATTGAG
TTTCCATATTTATATTGCAATGAAATAAGATTTGATTAAAGAGGTAAAAATATGTATTAC
TTTTAATTAGTTGTTCCTCCTAAATATTTTGTCAGAGAAAATTCAGCTAATATTTAAGAA
AACTTGGATTAAAAAAAGAACACTTGGATTAGAGTAGATAACTTCTTTGCTCATGACATC
AGTAATGAGCTTAAAAGAATAGAATTTGTAAACAATACAGTTATTTGTATTGAGATAGAA
AATGAAACAGTCAATACATTCTAAACGATACTTAAAAATTCTTTTTCAAACGTGTTTAAA
GATACAGACCCTATTCCTATTTCAAATGTGTCACAACATTTTCCTTAAGAACCTGAAAAT
GATTTAGACTAATAATGGGAAAGACTTCTAAATAGATATTCATTCAATTTAAGCTATTCG
ATCTTAACACTAATATCTCACAATAAACTAAGTGTCGTCAAATTAAGAGAATTTCTTGAC
TATATAGATCTTTAAATAAGAGATGGTAAATCAGAGTATATATTAGAAAAAGGAATTTAG
TATTATTACAACTAAAAGAAAGAAATTAATCGCCTCAATTTTACAGCTTTCTAAATACTT
TTCTAGGACGTGTAAAGATAAGAAAATTACTTCAAAATTTAAGAGATCAGAGCTAAAAGA
GATGTCAAAGTTATCGCAACAAGAAGGGTAAGTATTACTCCTAGTGGATTGATTTATAAC
TTAAAAGAATTAGAACTGTCAAATAGAGTTTTGAGAATTTTTTAAGACTCAACTGATTCA
TTTATAAGAGGAACATTTTAAGATGATTCCTTAGAAAATGCAAAGCATATGAAGTATGTC
TCAAGATATTTCAGGTAAAAGCTTAAATCCTTTAAAGTTTTAAACTGGGAATTTATTAAT
TTTGGATGGAGTGCTTCTCAACTTAGGAACTCATCATCTTGGTTCTTTCATGAAACTGAA
GTTCTCAAAAAATAAGATGTAATTACAAGAATTGGTGATTTTTCAGGTATTAATCCTCCA
GCTAAAAAATCTGCTAGAATTGGATAATGTTTTAGCTCAAGTACTCCCTATATCTTGAAA
GAAAGACCTAACATAGAATTCATTGATGATATTACTACACCCTCAGCAGTTTAAGAAGTT
GATGCTAATGGAAATATTTGCTACTTTAGATAAAAGAAAAAAGTTTTTACAGATGGTATT
GGAACTATTTCATAAGATCTTATAAGAAAAATATCAGATCATCTTAATGCCTTTTTTATG
TGTGCTATATAAGTAAGATATGGAGGAGCTAAAGGAGTGTTGACAATTGATTATAAAAGT
GATAAAAAAAATACAATATAGTTGAGAGAAAGTATGATAAAATATAAAATTACAGATGAA
TAAGACGAATTAATAATTGATATTCTAGATAGAAACAAATATAGATTTGGATATTTGAAT
AGGTAAGTCATTATCTTACTTAGATCACTAGGTATTGAAAACGAATAATTCATCTAAGCT
CAGCAAGAATACATAGAAGAGTTAAATAAGTCAGCATTGAAAGATGCAAGTATATTTACA
CTTTTTAACACAGATTATTCAAAGGATGGAACAAGATTATTTCCAATCACCCATCTTCTA
AGAAGTATGTAGACAAGTAGGATTGATATGGCCTAAGATATATTCTGTAAAGGAGTTATT
CATACCCTCAAAAAAAGAGGTTTTTATATTCTGAGAAAGAAGAGTAACATTTTTCTTAAA
AAGAGTGCAAGATTGATGGGTGTTATAGATGAATATAATGTGTTAGAACAAGATGAAGTT
TTTGCATATATAAGTTAGGATTCAGAAAAATCTTTCTTTTAAGTTGAGGGAGATGTAATT
GTAGTTAAAAACCCATGTTTACATCCTGGTGATATTAGAAAATTAAAAGCTGTTACTTTG
GAAACTATTTCGTAAAGATTAGGAGAAGGAAAAATAAATCCTTTTAAAAAATTAAGGAAC
ATCCTAATATTCCCTTAAAAAGGTAAAGAGCCTATCACTTCATAAATAGCAGGTTCCGAT
TTGGATGGTGATTGCTATTTTATTTGCTGGGATTAAAGATTTATTCCCTTGGAATAGAAA
GAACCTTTTAACTATGATGAAGATGATAATAGTTAAAAAAAATAAATCTCATAAGAACAG
TATGATATAGAAATCTCTAAAAAGCCTAATACTTAGTTTAAAACTAAAAATCCTGTACGA
GAAGTGATTGATGATAATGAATAAATGCTAGACTTTTTTATAGATTTTATAAATAATGAA
AATCTTGGTAAAATAGATAATTCTCATTTAGTCTTTGCAGATAAAAGTCCATTATACGCT
GAAGACCCTAAATGTTTAAAGTTGGCATCACTACATGCATAAGCTGTAGATTATGCAAAA
ACAGGTATTTCTCCTTAATTACCAAAAAACCTTGCAATAAAAGAGTACCCTGATTTTATG
GAAAAAGATGACAAACCATCTTATTAATCATAAAGCATTTTAGGTATTTTATATAGACAA
GTAAAAGACCAGTATGAAAAACACTGTAAAAACGATATAGAAGGAGATAGATCTTAAACT
TTTATTGATAATAATTTAATATTCAATCCGCCTACATTTGTTAACGAAATTGTAGATGAG
TAAGAAAATAAAACTTATCTTGAATAGGAAATTGATTTCGCTATTGAAGCAAATAATCAA
TGGAATATAGAAATAAATAATCTCAAGCAATTCTTTGGTGCTCAAAATGAGTTTGAAATT
TACACAGGTAATTTTTCCAAACTCATAAAAGTAGAGAGGAAAAAAAAGATGAGTGCAGAA
ATAGTATAGCAAAGAATCTTGTCTACATTATTAGCAATAAAAAATAGGTTTGAGCTTTTG
TTCTTTAAAAATTTAGATGAAGATAGAGATAGATTTTATGATGAAACAAACAGAAAAAAA
TATTATAGTAAAAAATGTAAAATAAGAGCTACTTTATGGTATATCATATGCTACTTAAGA
AAACCTGAACATATTGTTTAATATGCAGTAAACTTTGAGAAAGATTCTTTACTAGGACAG
ACTTTCACTTTTTTGAGTCAATAAAAATATTTTGGAGAAACAATCATAAGAGGAAATAGA
AATCCAAAAACTATTCAATTCTTCAATGAAAATAATGATTATGTTGGCTTATCATGGTTT
ATAATTAGTAATGTCCTGTTAGAAATAAAGAAAGATAATGATAACTATAAAATGAATGAA
TAAAAATAATAAAAAAGTGAATAATAAATAAAGGAATTTGAAGATTATAAAAAAAAATTC
TATTAAAATGATTTAAATGGATACCATTCTGACGAATATTTATGA
>TTHERM_00853150(gene)
TAATAATTAAACAATTCAATAATTTAACAAGTTTAGATATTAGATAAAAAATAGATAAGT
TAAAATGATTGAACAATCTATAGAAGAGGAAAAAATCATATGCTGTATAGGCTATATAAA
TGGAAAGATAACTTCTAAAAACTTTACTACCTCATTATGCTTTGCATCAATATAAAAATA
TCTTTAAGAGCAACAACATAGATTTAAAAGCATTAAATGTGTCTCTATTTATACTCCAAA
AAAGGAGCAATAGTAGATTGGTTTAGATACCATTGATGATGTTAAGGAAAAAATAAAAGA
GATACAGAAATCTATTGATCATAATTATTTGAATATACCTCAACACCTGAAAGAAGAGAG
ATATAGAGTAAACTATAAAAGCTTAAATTTTTAGGAAGGTTAATAGTCTTTGGATAATGA
TGATGATAGCAATTTACTTGGTAGTGAATATTAGTTTTTAAAAAACTTTATTACAAAAGA
AAATGATGATATTCATCTGAAGGAAGAAATGGCTAGCTTTAATAAAATAGAAAGCTTTTG
TTAAAATGTATTAAAGAACTCTAAAAATGAGTCTAAAATAAATACTGTAAACTAATAAAA
AGATTAGTATGCAAGGATAAATAGCTGGATTATAATTTTAAGTGGAACGGAATAGGATTT
AGAAGTTCTGAACGATTCAAAGATTGATGTAAAGACAAAACATGAAAAATATTACTTCTT
TTTAAAAACAAAACATAATGACAACGAAAAAAAAAATTATTTGAAAATTTGTACTGATGA
ATTATCGAATTATGCTAAGGAATAGATGAATTTTGTAAATATAAAATTGCTTCAAGTTAG
TTTAGGGATATTTGAATTATACGGCGGTGCTTTATACTACAATTGTTAGTTTTAATTTGA
AGAAAACATAGACTATGTAAACACAATCAGCATCTATATGTAAAATGATGAATCAGAGAG
CAAGTAAAAATAGTAATCGGTATCTATTGTGTTAGCATATAATGATTATTAGCTAAAAAT
TGAGTTTCCATATTTATATTGCAATGAAATAAGATTTGATTAAAGAGGTAAAAATATGTA
TTACTTTTAATTAGTTGTTCCTCCTAAATATTTTGTCAGAGAAAATTCAGCTAATATTTA
AGAAAACTTGGATTAAAAAAAGAACACTTGGATTAGAGTAGATAACTTCTTTGCTCATGA
CATCAGTAATGAGCTTAAAAGAATAGAATTTGTAAACAATACAGTTATTTGTATTGAGAT
AGAAAATGAAACAGTCAATACATTCTAAACGATACTTAAAAATTCTTTTTCAAACGTGTT
TAAAGATACAGACCCTATTCCTATTTCAAATGTGTCACAACATTTTCCTTAAGAACCTGA
AAATGATTTAGACTAATAATGGGAAAGACTTCTAAATAGATATTCATTCAATTTAAGCTA
TTCGATCTTAACACTAATATCTCACAATAAACTAAGTGTCGTCAAATTAAGAGAATTTCT
TGACTATATAGATCTTTAAATAAGAGATGGTAAATCAGAGTATATATTAGAAAAAGGAAT
TTAGTATTATTACAACTAAAAGAAAGAAATTAATCGCCTCAATTTTACAGCTTTCTAAAT
ACTTTTCTAGGACGTGTAAAGATAAGAAAATTACTTCAAAATTTAAGAGATCAGAGCTAA
AAGAGATGTCAAAGTTATCGCAACAAGAAGGGTAAGTATTACTCCTAGTGGATTGATTTA
TAACTTAAAAGAATTAGAACTGTCAAATAGAGTTTTGAGAATTTTTTAAGACTCAACTGA
TTCATTTATAAGAGGAACATTTTAAGATGATTCCTTAGAAAATGCAAAGCATATGAAGTA
TGTCTCAAGATATTTCAGGTAAAAGCTTAAATCCTTTAAAGTTTTAAACTGGGAATTTAT
TAATTTTGGATGGAGTGCTTCTCAACTTAGGAACTCATCATCTTGGTTCTTTCATGAAAC
TGAAGTTCTCAAAAAATAAGATGTAATTACAAGAATTGGTGATTTTTCAGGTATTAATCC
TCCAGCTAAAAAATCTGCTAGAATTGGATAATGTTTTAGCTCAAGTACTCCCTATATCTT
GAAAGAAAGACCTAACATAGAATTCATTGATGATATTACTACACCCTCAGCAGTTTAAGA
AGTTGATGCTAATGGAAATATTTGCTACTTTAGATAAAAGAAAAAAGTTTTTACAGATGG
TATTGGAACTATTTCATAAGATCTTATAAGAAAAATATCAGATCATCTTAATGCCTTTTT
TATGTGTGCTATATAAGTAAGATATGGAGGAGCTAAAGGAGTGTTGACAATTGATTATAA
AAGTGATAAAAAAAATACAATATAGTTGAGAGAAAGTATGATAAAATATAAAATTACAGA
TGAATAAGACGAATTAATAATTGATATTCTAGATAGAAACAAATATAGATTTGGATATTT
GAATAGGTAAGTCATTATCTTACTTAGATCACTAGGTATTGAAAACGAATAATTCATCTA
AGCTCAGCAAGAATACATAGAAGAGTTAAATAAGTCAGCATTGAAAGATGCAAGTATATT
TACACTTTTTAACACAGATTATTCAAAGGATGGAACAAGATTATTTCCAATCACCCATCT
TCTAAGAAGTATGTAGACAAGTAGGATTGATATGGCCTAAGATATATTCTGTAAAGGAGT
TATTCATACCCTCAAAAAAAGAGGTTTTTATATTCTGAGAAAGAAGAGTAACATTTTTCT
TAAAAAGAGTGCAAGATTGATGGGTGTTATAGATGAATATAATGTGTTAGAACAAGATGA
AGTTTTTGCATATATAAGTTAGGATTCAGAAAAATCTTTCTTTTAAGTTGAGGGAGATGT
AATTGTAGTTAAAAACCCATGTTTACATCCTGGTGATATTAGAAAATTAAAAGCTGTTAC
TTTGGAAACTATTTCGTAAAGATTAGGAGAAGGAAAAATAAATCCTTTTAAAAAATTAAG
GAACATCCTAATATTCCCTTAAAAAGGTAAAGAGCCTATCACTTCATAAATAGCAGGTTC
CGATTTGGATGGTGATTGCTATTTTATTTGCTGGGATTAAAGATTTATTCCCTTGGAATA
GAAAGAACCTTTTAACTATGATGAAGATGATAATAGTTAAAAAAAATAAATCTCATAAGA
ACAGTATGATATAGAAATCTCTAAAAAGCCTAATACTTAGTTTAAAACTAAAAATCCTGT
ACGAGAAGTGATTGATGATAATGAATAAATGCTAGACTTTTTTATAGATTTTATAAATAA
TGAAAATCTTGGTAAAATAGATAATTCTCATTTAGTCTTTGCAGATAAAAGTCCATTATA
CGCTGAAGACCCTAAATGTTTAAAGTTGGCATCACTACATGCATAAGCTGTAGATTATGC
AAAAACAGGTATTTCTCCTTAATTACCAAAAAACCTTGCAATAAAAGAGTACCCTGATTT
TATGGAAAAAGATGACAAACCATCTTATTAATCATAAAGCATTTTAGGTATTTTATATAG
ACAAGTAAAAGACCAGTATGAAAAACACTGTAAAAACGATATAGAAGGAGATAGATCTTA
AACTTTTATTGATAATAATTTAATATTCAATCCGCCTACATTTGTTAACGAAATTGTAGA
TGAGTAAGAAAATAAAACTTATCTTGAATAGGAAATTGATTTCGCTATTGAAGCAAATAA
TCAATGGAATATAGAAATAAATAATCTCAAGCAATTCTTTGGTGCTCAAAATGAGTTTGA
AATTTACACAGGTAATTTTTCCAAACTCATAAAAGTAGAGAGGAAAAAAAAGATGAGTGC
AGAAATAGTATAGCAAAGAATCTTGTCTACATTATTAGCAATAAAAAATAGGTTTGAGCT
TTTGTTCTTTAAAAATTTAGATGAAGATAGAGATAGATTTTATGATGAAACAAACAGAAA
AAAATATTATAGTAAAAAATGTAAAATAAGAGCTACTTTATGGTATATCATATGCTACTT
AAGAAAACCTGAACATATTGTTTAATATGCAGTAAACTTTGAGAAAGATTCTTTACTAGG
ACAGACTTTCACTTTTTTGAGTCAATAAAAATATTTTGGAGAAACAATCATAAGAGGAAA
TAGAAATCCAAAAACTATTCAATTCTTCAATGAAAATAATGATTATGTTGGCTTATCATG
GTTTATAATTAGTAATGTCCTGTTAGAAATAAAGAAAGATAATGATAACTATAAAATGAA
TGAATAAAAATAATAAAAAAGTGAATAATAAATAAAGGAATTTGAAGATTATAAAAAAAA
ATTCTATTAAAATGATTTAAATGGATACCATTCTGACGAATATTTATGATTTTCAGCTAG
TTAGCCAGATATTTATTTGCTAGATATAGCATTAAAAGAAATTTAAAATATGTTATTTAT
ATATTTTTAATAATACTTTGCAAAAATTTATGCTAACAAGTATTTAATACAATAATGATA
CATATATAAAATAAATAA
>TTHERM_00853150(protein)
MIEQSIEEEKIICCIGYINGKITSKNFTTSLCFASIQKYLQEQQHRFKSIKCVSIYTPKK
EQQQIGLDTIDDVKEKIKEIQKSIDHNYLNIPQHLKEERYRVNYKSLNFQEGQQSLDNDD
DSNLLGSEYQFLKNFITKENDDIHLKEEMASFNKIESFCQNVLKNSKNESKINTVNQQKD
QYARINSWIIILSGTEQDLEVLNDSKIDVKTKHEKYYFFLKTKHNDNEKKNYLKICTDEL
SNYAKEQMNFVNIKLLQVSLGIFELYGGALYYNCQFQFEENIDYVNTISIYMQNDESESK
QKQQSVSIVLAYNDYQLKIEFPYLYCNEIRFDQRGKNMYYFQLVVPPKYFVRENSANIQE
NLDQKKNTWIRVDNFFAHDISNELKRIEFVNNTVICIEIENETVNTFQTILKNSFSNVFK
DTDPIPISNVSQHFPQEPENDLDQQWERLLNRYSFNLSYSILTLISHNKLSVVKLREFLD
YIDLQIRDGKSEYILEKGIQYYYNQKKEINRLNFTAFQILFQDVQRQENYFKIQEIRAKR
DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLENAKHMKYV
SRYFRQKLKSFKVLNWEFINFGWSASQLRNSSSWFFHETEVLKKQDVITRIGDFSGINPP
AKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDANGNICYFRQKKKVFTDGI
GTISQDLIRKISDHLNAFFMCAIQVRYGGAKGVLTIDYKSDKKNTIQLRESMIKYKITDE
QDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQQEYIEELNKSALKDASIFT
LFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKGVIHTLKKRGFYILRKKSNIFLK
KSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQVEGDVIVVKNPCLHPGDIRKLKAVTL
ETISQRLGEGKINPFKKLRNILIFPQKGKEPITSQIAGSDLDGDCYFICWDQRFIPLEQK
EPFNYDEDDNSQKKQISQEQYDIEISKKPNTQFKTKNPVREVIDDNEQMLDFFIDFINNE
NLGKIDNSHLVFADKSPLYAEDPKCLKLASLHAQAVDYAKTGISPQLPKNLAIKEYPDFM
EKDDKPSYQSQSILGILYRQVKDQYEKHCKNDIEGDRSQTFIDNNLIFNPPTFVNEIVDE
QENKTYLEQEIDFAIEANNQWNIEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAE
IVQQRILSTLLAIKNRFELLFFKNLDEDRDRFYDETNRKKYYSKKCKIRATLWYIICYLR
KPEHIVQYAVNFEKDSLLGQTFTFLSQQKYFGETIIRGNRNPKTIQFFNENNDYVGLSWF
IISNVLLEIKKDNDNYKMNEQKQQKSEQQIKEFEDYKKKFYQNDLNGYHSDEYL