Identifiers and Description

Gene Model Identifier

TTHERM_01207565

Standard Name

RDF1 (RDr1-associated Factor 1)

Aliases

TTHERM_001207561

Description

RDF1 RNA-dependent RNA polymerase-associated factor 1, RDF1 Associated with Rdr1; component of RDRC complex in RNAi pathway; involved in 23-24 nucleotide RNA metabolism; hypothetical protein

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

No Data fetched for Domains

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

No Data fetched for Homologs

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:19656801: Couvillion MT, Lee SR, Hogstad B, Malone CD, Tonkin LA, Sachidanandam R, Hannon GJ, Collins K (2009) Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila. Genes & development 23(17):2016-32
  2. Ref:19451546: Lee SR, Talsky KB, Collins K (2009) A single RNA-dependent RNA polymerase assembles with mutually exclusive nucleotidyl transferase subunits to direct different pathways of small RNA biogenesis. RNA (New York, N.Y.) 15(7):1363-74

Sequences 

>TTHERM_01207565(coding)
ATGTAGTCTTATTAAAGTTCTGAAAGACTTAGTATTCAGCTTTAAATTTCTCTGATAAAA
TATGATAAAATTTTACTAAATGAAGGATTAATAAATGCTTACAATCCAATATATACTATT
ATTTAAGTAAACTGTAATTAAGAAAATGCTATTTTATAATCTCAAGTATTACCTGATATT
ATGGACTTAGATTTAATACAAATGACTTATCAAAAGAATGCTTATTTACTTAAATGTAAT
AATAAAGGTTAAATTCTTTTTTCAGGAAAGCAAATTGATCAAAAGTATTAATTTATTTTT
AATGATAAGTTTGAAGTTGCGATTGATAAACTAGCATTTATTTCTGGATAATCATTCTTA
TTTTTTTTAGACAAGGAAAAAAATGTTTCCACTCTCTAATTCTTAGGATAATCATAATAA
AAATATTCAAAATAAATACATTCAAAAGTAGATTTCTTGATTGGTTCTAAGGATTAGAGC
TCTGTATTATTAGTTGATGAGTTTAGGAGGTTTATTATTTATGATTAAAGTGTTTTTAAA
AATGTAAATTAACTTTCTCCGCTATAATTAGAAATAGATTCTAGCTAAAAATAACTATTA
TAGGAAGATAATGAAAGGATTTTAAGTTCTATTTAAAGTATTGATTATATCTAGCATGAA
GCAGGATATTTTATTTATCTAGCAAGTTAACAGTATCTATACAAACTTAATTATCATAGA
GATAATGAGGGAATATAAGTAAATTAAATAATAAGAATTGACTAAAGTAGAGGCAAAGTT
TAAAAAATTGTTGCATTAAATTCAAATTAAGGAAAATATTTTGAAGTAGTTGTAGTGCAG
TAAAAAAGTGTTGACTAATACTTGTTTACATAAAAATTCAGTACTAAAAATTTATGGAAA
AGCAATGATGATAGTGATAAAATTGCATTTGATTACACTTACAAAACCAAAAATAGTACA
TATTATCATATAATTTAATGTGTTTCCTAACAAGAACTTTATAAAAATAAATAAAACTAG
CTAGAATTTAATAAATCTTATGTTTTTGTTACTAAAGATTGA



>TTHERM_01207565(gene)
TAAGTAAAAAATAAAAATTATATAAATATTAATTAATATCTTAGTTAGAATATTAAGAAG
GCAAATTTAAAATAACAAGCAAAAAATAAAATGTAGTCTTATTAAAGTTCTGAAAGACTT
AGTATTCAGCTTTAAATTTCTCTGATAAAATATGATAAAATTTTACTAAATGAAGGATTA
ATAAATGCTTACAATCCAATATATACTATTATTTAAGTAAACTGTAATTAAGAAAATGCT
ATTTTATAATCTCAAGTATTACCTGATATTATGGACTTAGATTTAATACAAATGACTTAT
CAAAAGAATGCTTATTTACTTAAATGTAATAATAAAGGTTAAATTCTTTTTTCAGGAAAG
CAAATTGATCAAAAGTATTAATTTATTTTTAATGATAAGTTTGAAGTTGCGATTGATAAA
CTAGCATTTATTTCTGGATAATCATTCTTATTTTTTTTAGACAAGGAAAAAAATGTTTCC
ACTCTCTAATTCTTAGGATAATCATAATAAAAATATTCAAAATAAATACATTCAAAAGTA
GATTTCTTGATTGGTTCTAAGGATTAGAGCTCTGTATTATTAGTTGATGAGTTTAGGAGG
TTTATTATTTATGATTAAAGTGTTTTTAAAAATGTAAATTAACTTTCTCCGCTATAATTA
GAAATAGATTCTAGCTAAAAATAACTATTATAGGAAGATAATGAAAGGATTTTAAGTTCT
ATTTAAAGTATTGATTATATCTAGCATGAAGCAGGATATTTTATTTATCTAGCAAGTTAA
CAGTATCTATACAAACTTAATTATCATAGAGATAATGAGGGAATATAAGTAAATTAAATA
ATAAGAATTGACTAAAGTAGAGGCAAAGTTTAAAAAATTGTTGCATTAAATTCAAATTAA
GGAAAATATTTTGAAGTAGTTGTAGTGCAGTAAAAAAGTGTTGACTAATACTTGTTTACA
TAAAAATTCAGTACTAAAAATTTATGGAAAAGCAATGATGATAGTGATAAAATTGCATTT
GATTACACTTACAAAACCAAAAATAGTACATATTATCATATAATTTAATGTGTTTCCTAA
CAAGAACTTTATAAAAATAAATAAAACTAGCTAGAATTTAATAAATCTTATGTTTTTGTT
ACTAAAGATTGATTTTAAATAATACATTATTAATTATTTATTAAATGTATGTATGTATCA
CTTATTTTTATTAATATAAATAATCAAACATGTTCT



>TTHERM_01207565(protein)
MQSYQSSERLSIQLQISLIKYDKILLNEGLINAYNPIYTIIQVNCNQENAILQSQVLPDI
MDLDLIQMTYQKNAYLLKCNNKGQILFSGKQIDQKYQFIFNDKFEVAIDKLAFISGQSFL
FFLDKEKNVSTLQFLGQSQQKYSKQIHSKVDFLIGSKDQSSVLLVDEFRRFIIYDQSVFK
NVNQLSPLQLEIDSSQKQLLQEDNERILSSIQSIDYIQHEAGYFIYLASQQYLYKLNYHR
DNEGIQVNQIIRIDQSRGKVQKIVALNSNQGKYFEVVVVQQKSVDQYLFTQKFSTKNLWK
SNDDSDKIAFDYTYKTKNSTYYHIIQCVSQQELYKNKQNQLEFNKSYVFVTKD