Identifiers and Description

Gene Model Identifier

TTHERM_01299730

Standard Name

CPH4 (homolog of CAP-H or BRN1 condensin gene)

Aliases

PreTt17579 | 315.m00030

Description

condensin complex subunit 2; condensin subunit- kleisin

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

External Links

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF02616 ) ScpA/B protein
  • ( PF05786 ) Barren protein
  • ( TIGR00133 ) glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B
  • ( TIGR01396 ) flagellar basal-body rod protein FlgB

Gene Expression Profile

Vegetative Cell Cycle (Zhang et al., 2023)

GeneMania

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_19650.1 9.997093137033517e-262
Description: hypothetical protein (865 aa)
DictyBase DDB_G0292066 5.000468829272308e-18
Description: ncapH on chromosome: 6 position 1141212 to 1144129
Oxytricha Contig18145.0.g34 1.000361553249356e-16
Description: Condensin complex subunit 2
SGD YBL097W 0.0000020007268868677913
Description: BRN1 Subunit of the condensin complex; required for chromosome condensation and for clustering of tRNA genes at the nucleolus; may influence multiple aspects of chromosome transmission
Stentor Coeruleus SteCoe_31169 0.00001670170079024566
Description: None

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:29237819: Howard-Till R, Loidl J (2018) Condensins promote chromosome individualization and segregation during mitosis, meiosis, and amitosis in Tetrahymena thermophila. Molecular biology of the cell 29(4):466-478

Sequences 

>TTHERM_01299730(coding)
ATGAATCGTCAGCCAAGGCGTAAAACAGAAAATAACTACAAAGATGTGATAGAGGAAGAA
ATAAACGATTTAGTAACTCATGAAGAAAATGTGTTAAATATAGCAGCTGGAAATAAATTA
AAATTGCAAAATAAAAATTCACGCAAAATTTCAAACGAAATAGATGATGACGAAGAAGAT
GAAGAAATAGATTTCATAGATTCGCAAGATGCAAGTAATGGAGCTGCTGAAAAGTTATAG
CGTGTTTATAGATAGCTATTAAAAAACAAAATTAAGGTAGACAATGTCTTCGATATTTAA
TGGGATGAAAAAACTAAATTAGCAGATTTAGATTGGTAGAGCTCTGCTAATTTCTTAGAT
ACTATTAGTAAAGTTTGGGGCATTAAGGTAGAAAAGACTCATAAAGATACCTATAGAATT
TTGGGAAACCTTATCCGTTCCGAGATCTAAGATCCGGAAGAAGAAGTTGATCCATCAAAA
AAGATAAAAGAAAACTTAGATTTAGCAAAAATATTATCTAAAGCTATTTAAAGACAAACC
AATGACTAATATGGTGCCAAAACACTTGAAAAAAATCCTGATAATTTAGATGTTGTTACA
TACGACATAGAATTTGATGTTGATCCACTCTTTAAAAAAACTTCTGCTAAATTTGACGAG
TAGGGTGCAAGTGGATTACTTATAAATAACCTTTATATGGATTCAAATATGATGCTTATG
CTTGAATCACATCAACCTAATGAGTAAAAGGCTGAAGAAGAGGAGCGTAAAGAAATGTTA
ACATAAAAATCTTTACAATAAAACTTATCTCAAGAGTGCTCTAATTATTGGAGAATTGTA
GATACTAACAATCTCTTTTCTAGCAAATGCTCAATTGCAGAAAGGTTATCAAATTTTAAA
AAACTCCTTACATCTTCAGAAGATGAAAACACTTTAGTTAAATTGAATAATGAAGTTACA
TAGATGAACAGTAAATTAAAGCAAAACTCTTAAAAAACAACAGCTTCTGAATAGAATATA
AGTGCTTAACCTGTAATTGATGAAGTTAGAGTAGATATCTTGAATGATGATGAATTATAA
GCATTATATGATTAAGGAGTAGTTGATCCATTTGGCAAAGATGAGCTTTACGGCTCTAAT
AGATAAAAAACAAGCAGCTTAGCTGGTTTTATCGTAGATGACGATGATGATGATAGTAGT
AAAAAATAAAGGTTAGGTGATAATGAATAAAAGAATAAGAAGGAAAGTGTTATAGAGGCT
ATTATTGTAGAAGAAAGTGAGGAGGACGAAGAAAAATAAAAAGCAATAAATGGTGTAGAA
GAAGCAGAGGAGAGAAAAGATTAAGAAAAACCAAACAAAAAGGTGGATGAAGGAGAGGAT
GAAGAAGACGAAGAAGAAAAAAAACTTAAATAATAAGAATAGGATGATGAAGATGACAAA
AAAGTTGTCTTATTCACTGAAGCTAAAGAAAAGTAAAGTGATGAAGAAGATGAAGATAAA
GCCAAAAGCGATGAAGAGGATTCCGTAGAAGAAATGGAAGAAGAGGAAGATGAAGAAGGT
AATATAGTTAAGAGAAGAAAAGTTAAGGGTCCCTTAGATTTTGCAGGAATCGACGAAAAA
CTTAAAACAGTAGGTAGAGGTATGCATAAGAAATTCAATGAAGAATTTAATGAGTTACCT
CAGCCTAAAACTAACAAGAAGAAGAAGAAAAACAAAAAATCTGGTGATGATGAGGAAGAA
AATAAAAAATATTTCGACTTTAATACTAAAATAACTGAAAAAGTGGATATCATTTTGGCA
AATAAAAAGAAAAGAACTATTAAAGATTATTTAAAAAGTGTTAAGTTTATATTCGAAGAT
AAAGATCATTTATTTTTGAGTGATAAAATTTTTATGAAAATGACAGAAGGTCTAACTAAT
CCATTTAATGTTAATGAAATGTACTTAGAAATGAAAAATAACAAAAACGAACCTGCAATT
AATGAAAATATTTTACCAGAAATCAATATAGATGATAATGATGATTCTTTAGATATTAAT
AATAACTTCAGAAACTTATTTGCTTTAAATTATGGTAATGATGAAGAAGACGAAGAAAAA
TTCAAAGAGCAAAAGAATCATGTTAAAATAAGAGATTTAAAGAGAAAACTTTGGGACAAA
TTAAGATCTAAAATTTTAGAAAACCATGCTAATTTCTAGAAGTAAAAACAAACAAGAAAG
AAATAAGAAAAGGAAGAAATGGAATAAATTCAATTCACTAATATGATGACTGAATTACCA
AGTATGTTCGGAGAAAGTGCTAAAAGAGTATCAATGCAATCATGCTTTATCACAATCTTG
CATTTAGCGAATGAATAAACATTAAAATTAAGCAATTAAGAAGGAGAAGACTTTGGTATA
ACAAAAGAATCTAAAGCTGACTTGGCACAGGAATTGTTAGAATTAAAGAGATAATAAGAA
TAAGAAGAAGAACAAGAAAAACTCAAAAAGATTGAAGAAGAAGAAATTAATGAAGATGAA
GAAGAAGACCTTTAAAATAGTGGTAAAAAATCTAAAGGTGTATCTGATAATTTAAATGGA
AATTAAAACATTGAAAAAATGTAGCTAGAGTGA


>TTHERM_01299730(gene)
ATGAATCGTCAGCCAAGGCGTAAAACAGAAAATAACTACAAAGATGTGATAGAGGAAGAA
ATAAACGATTTAGTAACTCATGAAGAAAATGTGTTAAATATAGCAGCTGGAAATAAATTA
AAATTGCAAAATAAAAATTCACGCAAAATTTCAAACGAAATAGATGATGACGAAGAAGAT
GAAGAAATAGATTTCATAGATTCGCAAGATGCAAGTAATGGAGCTGCTGAAAAGTTATAG
CGTGTTTATAGATAGCTATTAAAAAACGTAAAAATTTAGAGAATAGATAAAAAACCATTA
AATAAAATATTTAATCTACTTTTAAAGTAGAAAAATAAAAGCATTCAAATGTTAAAATAG
CATTTAAATGCATAAACATGACAGAATCAATAGACAAATAGTTGTTTTAAGAAATACATT
TTAATTTACTTTCTAAAATAAATAGAAAATTAAGGTAGACAATGTCTTCGATATTTAATG
GGATGAAAAAACTAAATTAGCAGATTTAGATTGGTAGAGCTCTGCTAATTTCTTAGATAC
TATTAGTAAAGTTTGGGGCATTAAGGTAGAAAAGACTCATAAAGATACCTATAGAATTTT
GGGAAACCTTATCCGTTCCGAGATCTAAGATCCGGAAGAAGAAGGTATAAATTTTTTTAG
TATTTAATAAGGAGCTAGCAAATAATATCTAACAAAGGGTAGAGTATATATTTTAGACAC
GTATTTTATTTTACCTTCCTACTCTACTTCTGTGTAAATATATGCCTATGTGATAATCTT
CATCTTTTCTTACTGCAGAATAAAATTTACTAAAGATATATTTAAATTTATTTTATGTAG
ATTAACTGATAAAAATAATTTGAAAAAGGGGTTAATATTTATGATATATTTTTATCAATA
AATTTGAAATGCTTTACTTACTTACTTACAAATAAATGACTTAAAACAAAGAAAGCTCTT
AAAAGAAGCATATTATGAGAATAAATATACATATTATCATTATTTATTTTTATTATCAAA
AAAGTTGATCCATCAAAAAAGATAAAAGAAAACTTAGATTTAGCAAAAATATTATCTAAA
GCTATTTAAAGACAAACCAATGACTAATATGGTGCCAAAACACTTGAAAAAAATCCTGAT
AATTTAGATGTTGTTACATACGACATAGAATTTGATGTTGATCCACTCTTTAAAAAAACT
TCTGCTAAATTTGACGAGTAGGGTGCAAGTGGATTACTTATAAATAACCTTTATATGGAT
TCAAATATGATGCTTATGCTTGAATCACATCAACCTAATGAGTAAAAGGCTGAAGAAGAG
GAGCGTAAAGAAATGTTAACATAAAAATCTTTACAATAAAACTTATCTCAAGAGTGCTCT
AATTATTGGAGAATTGTAGATACTAACAATCTCTTTTCTAGCAAATGCTCAATTGCAGAA
AGGTTATCAAATTTTAAAAAACTCCTTACATCTTCAGAAGATGAAAACACTTTAGTTAAA
TTGAATAATGAAGTAAATAGACATTCAAGATTAAAATGGTTAAATATTTTCTATTTAAAA
AGGTTACATAGATGAACAGTAAATTAAAGCAAAACTCTTAAAAAACAACAGCTTCTGAAT
AGAATATAAGTGCTTAACCTGTAATTGATGAAGTTAGAGTAGATATCTTGAATGATGATG
AATTATAAGCATTATATGATTAAGGAGTAGTTGATCCATTTGGCAAAGATGAGCTTTACG
GCTCTAATAGATAAGTACGATTTTATTTGTTAAGAAAAGTTTTTATTAATTTTTTATTAG
AAAACAAGCAGCTTAGCTGGTTTTATCGTAGATGACGATGATGATGATAGTAGTAAAAAA
TAAAGGTTAGGTGATAATGAATAAAAGAATAAGAAGGAAAGTGTTATAGAGGCTATTATT
GTAGAAGAAAGTGAGGAGGACGAAGAAAAATAAAAAGCAATAAATGGTGTAGAAGAAGCA
GAGGAGAGAAAAGATTAAGAAAAACCAAACAAAAAGGTGGATGAAGGAGAGGATGAAGAA
GACGAAGAAGAAAAAAAACTTAAATAATAAGAATAGGATGATGAAGATGACAAAAAAGTT
GTCTTATTCACTGAAGCTAAAGAAAAGTAAAGTGATGAAGAAGATGAAGATAAAGCCAAA
AGCGATGAAGAGGATTCCGTAGAAGAAATGGAAGAAGAGGAAGATGAAGAAGGTAATATA
GTTAAGAGAAGAAAAGTTAAGGGTCCCTTAGATTTTGCAGGAATCGACGAAAAACTTAAA
ACAGTAGGTAGAGGTATGCATAAGAAATTCAAGTAAAACTAATTAAAAATAAAACTTTAA
ATTGAGTAAATTTTAAATTGTTTTTTATTCTTTTAGTGAAGAATTTAATGAGTTACCTCA
GCCTAAAACTAACAAGAAGAAGAAGAAAAACAAAAAATCTGGTGATGATGAGGAAGAAAA
TAAAAAATATTTCGACTTTAATACTAAAATAGTAATTAAGAAACATAAAATTATTTTTTT
TCTTTATTATTTTTTTATGCTAATAAAACAAACAGACTGAAAAAGTGGATATCATTTTGG
CAAATAAAAAGAAAAGAACTATTAAAGATTATTTAAAAAGTGTTAAGTTTATATTCGAAG
ATAAAGATCATTTATTTTTGAGTGATAAAATTTTTATGAAAATGACAGAAGGTCTAACTA
ATCCATTTAATGTTAATGAAATGTACTTAGAAATGAAAAATAACAAAAACGAACCTGCAA
TTAATGAAAATATTTTACCAGAAATCAATATAGATGATAATGATGATTCTTTAGATATTA
ATAATAACTTCAGAAACTTATTTGCTTTAAATTATGGTAATGATGAAGAAGACGAAGAAA
AAGTATATTCTTTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTCAAATTCA
GACATTCATTAAATGTTTCTTAATTTTTTATTATAGTTCAAAGAGCAAAAGAATCATGTT
AAAATAAGAGATTTAAAGAGAAAACTTTGGGACAAATTAAGATCTAAAATTTTAGAAAAC
CATGCTAATTTCTAGAAGTAAAAACAAACAAGAAAGAAATAAGAAAAGGAAGAAATGGAA
TAAATTCAATTCACTAATATGATGACTGAATTACCAAGTATGTTCGGAGAAAGTGCTAAA
AGAGTATCAATGCAATCATGCTTTATCACAATCTTGCATTTAGCGAATGAATAAACATTA
AAATTAAGCAATTAAGAAGGAGAAGACTTTGGTATAACAAAAGAATCTAAAGCTGACTTG
GCACAGGAATTGTTAGAATTAAAGAGATAATAAGAATAAGAAGAAGAACAAGAAAAACTC
AAAAAGATTGAAGAAGAAGAAATTAATGAAGATGAAGAAGAAGACCTTTAAAATAGTGGT
AAAAAATCTAAAGGTGTATCTGATAATTTAAATGGAAATTAAAACATTGAAAAAATGTAG
CTAGAGTGA


>TTHERM_01299730(protein)
MNRQPRRKTENNYKDVIEEEINDLVTHEENVLNIAAGNKLKLQNKNSRKISNEIDDDEED
EEIDFIDSQDASNGAAEKLQRVYRQLLKNKIKVDNVFDIQWDEKTKLADLDWQSSANFLD
TISKVWGIKVEKTHKDTYRILGNLIRSEIQDPEEEVDPSKKIKENLDLAKILSKAIQRQT
NDQYGAKTLEKNPDNLDVVTYDIEFDVDPLFKKTSAKFDEQGASGLLINNLYMDSNMMLM
LESHQPNEQKAEEEERKEMLTQKSLQQNLSQECSNYWRIVDTNNLFSSKCSIAERLSNFK
KLLTSSEDENTLVKLNNEVTQMNSKLKQNSQKTTASEQNISAQPVIDEVRVDILNDDELQ
ALYDQGVVDPFGKDELYGSNRQKTSSLAGFIVDDDDDDSSKKQRLGDNEQKNKKESVIEA
IIVEESEEDEEKQKAINGVEEAEERKDQEKPNKKVDEGEDEEDEEEKKLKQQEQDDEDDK
KVVLFTEAKEKQSDEEDEDKAKSDEEDSVEEMEEEEDEEGNIVKRRKVKGPLDFAGIDEK
LKTVGRGMHKKFNEEFNELPQPKTNKKKKKNKKSGDDEEENKKYFDFNTKITEKVDIILA
NKKKRTIKDYLKSVKFIFEDKDHLFLSDKIFMKMTEGLTNPFNVNEMYLEMKNNKNEPAI
NENILPEINIDDNDDSLDINNNFRNLFALNYGNDEEDEEKFKEQKNHVKIRDLKRKLWDK
LRSKILENHANFQKQKQTRKKQEKEEMEQIQFTNMMTELPSMFGESAKRVSMQSCFITIL
HLANEQTLKLSNQEGEDFGITKESKADLAQELLELKRQQEQEEEQEKLKKIEEEEINEDE
EEDLQNSGKKSKGVSDNLNGNQNIEKMQLE