Identifiers and Description

Gene Model Identifier

TTHERM_01299730

Standard Name

CPH4 (homolog of CAP-H or BRN1 condensin gene)

Aliases

PreTt17579 | 315.m00030

Description

condensin complex subunit 2; condensin subunit- kleisin

Genome Browser (Macronucleus)

Full Screen View


Genome Browser (Micronucleus)

Full Screen View

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

  • ( PF02616 ) ScpA/B protein
  • ( PF05786 ) Barren protein
  • ( TIGR00133 ) glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B
  • ( TIGR01396 ) flagellar basal-body rod protein FlgB

Gene Expression Profile

Tetrahymena Stock Center

No Data fetched for Tetrahymena Stock Center

Homologs

Source Identifier Score
Tetrahymena borealis EI9_19650.1 9.997093137033517e-262
Description: hypothetical protein (865 aa)
DictyBase DDB_G0292066 5.000468829272308e-18
Description: ncapH on chromosome: 6 position 1141212 to 1144129
Oxytricha Contig18145.0.g34 1.000361553249356e-16
Description: Condensin complex subunit 2
SGD YBL097W 0.0000020007268868677913
Description: BRN1 Subunit of the condensin complex; required for chromosome condensation and for clustering of tRNA genes at the nucleolus; may influence multiple aspects of chromosome transmission
Stentor Coeruleus SteCoe_31169 0.00001670170079024566
Description: None

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:29237819: Howard-Till R, Loidl J (2018) Condensins promote chromosome individualization and segregation during mitosis, meiosis, and amitosis in Tetrahymena thermophila. Molecular biology of the cell 29(4):466-478

Sequences 

>TTHERM_01299730(coding)
ATGAATCGTCAGCCAAGGCGTAAAACAGAAAATAACTACAAAGATGTGATAGAGGAAGAA
ATAAACGATTTAGTAACTCATGAAGAAAATGTGTTAAATATAGCAGCTGGAAATAAATTA
AAATTGCAAAATAAAAATTCACGCAAAATTTCAAACGAAATAGATGATGACGAAGAAGAT
GAAGAAATAGATTTCATAGATTCGCAAGATGCAAGTAATGGAGCTGCTGAAAAGTTATAG
CGTGTTTATAGATAGCTATTAAAAAACAAAATTAAGGTAGACAATGTCTTCGATATTTAA
TGGGATGAAAAAACTAAATTAGCAGATTTAGATTGGTAGAGCTCTGCTAATTTCTTAGAT
ACTATTAGTAAAGTTTGGGGCATTAAGGTAGAAAAGACTCATAAAGATACCTATAGAATT
TTGGGAAACCTTATCCGTTCCGAGATCTAAGATCCGGAAGAAGAAGTTGATCCATCAAAA
AAGATAAAAGAAAACTTAGATTTAGCAAAAATATTATCTAAAGCTATTTAAAGACAAACC
AATGACTAATATGGTGCCAAAACACTTGAAAAAAATCCTGATAATTTAGATGTTGTTACA
TACGACATAGAATTTGATGTTGATCCACTCTTTAAAAAAACTTCTGCTAAATTTGACGAG
TAGGGTGCAAGTGGATTACTTATAAATAACCTTTATATGGATTCAAATATGATGCTTATG
CTTGAATCACATCAACCTAATGAGTAAAAGGCTGAAGAAGAGGAGCGTAAAGAAATGTTA
ACATAAAAATCTTTACAATAAAACTTATCTCAAGAGTGCTCTAATTATTGGAGAATTGTA
GATACTAACAATCTCTTTTCTAGCAAATGCTCAATTGCAGAAAGGTTATCAAATTTTAAA
AAACTCCTTACATCTTCAGAAGATGAAAACACTTTAGTTAAATTGAATAATGAAGTTACA
TAGATGAACAGTAAATTAAAGCAAAACTCTTAAAAAACAACAGCTTCTGAATAGAATATA
AGTGCTTAACCTGTAATTGATGAAGTTAGAGTAGATATCTTGAATGATGATGAATTATAA
GCATTATATGATTAAGGAGTAGTTGATCCATTTGGCAAAGATGAGCTTTACGGCTCTAAT
AGATAAAAAACAAGCAGCTTAGCTGGTTTTATCGTAGATGACGATGATGATGATAGTAGT
AAAAAATAAAGGTTAGGTGATAATGAATAAAAGAATAAGAAGGAAAGTGTTATAGAGGCT
ATTATTGTAGAAGAAAGTGAGGAGGACGAAGAAAAATAAAAAGCAATAAATGGTGTAGAA
GAAGCAGAGGAGAGAAAAGATTAAGAAAAACCAAACAAAAAGGTGGATGAAGGAGAGGAT
GAAGAAGACGAAGAAGAAAAAAAACTTAAATAATAAGAATAGGATGATGAAGATGACAAA
AAAGTTGTCTTATTCACTGAAGCTAAAGAAAAGTAAAGTGATGAAGAAGATGAAGATAAA
GCCAAAAGCGATGAAGAGGATTCCGTAGAAGAAATGGAAGAAGAGGAAGATGAAGAAGGT
AATATAGTTAAGAGAAGAAAAGTTAAGGGTCCCTTAGATTTTGCAGGAATCGACGAAAAA
CTTAAAACAGTAGGTAGAGGTATGCATAAGAAATTCAATGAAGAATTTAATGAGTTACCT
CAGCCTAAAACTAACAAGAAGAAGAAGAAAAACAAAAAATCTGGTGATGATGAGGAAGAA
AATAAAAAATATTTCGACTTTAATACTAAAATAACTGAAAAAGTGGATATCATTTTGGCA
AATAAAAAGAAAAGAACTATTAAAGATTATTTAAAAAGTGTTAAGTTTATATTCGAAGAT
AAAGATCATTTATTTTTGAGTGATAAAATTTTTATGAAAATGACAGAAGGTCTAACTAAT
CCATTTAATGTTAATGAAATGTACTTAGAAATGAAAAATAACAAAAACGAACCTGCAATT
AATGAAAATATTTTACCAGAAATCAATATAGATGATAATGATGATTCTTTAGATATTAAT
AATAACTTCAGAAACTTATTTGCTTTAAATTATGGTAATGATGAAGAAGACGAAGAAAAA
TTCAAAGAGCAAAAGAATCATGTTAAAATAAGAGATTTAAAGAGAAAACTTTGGGACAAA
TTAAGATCTAAAATTTTAGAAAACCATGCTAATTTCTAGAAGTAAAAACAAACAAGAAAG
AAATAAGAAAAGGAAGAAATGGAATAAATTCAATTCACTAATATGATGACTGAATTACCA
AGTATGTTCGGAGAAAGTGCTAAAAGAGTATCAATGCAATCATGCTTTATCACAATCTTG
CATTTAGCGAATGAATAAACATTAAAATTAAGCAATTAAGAAGGAGAAGACTTTGGTATA
ACAAAAGAATCTAAAGCTGACTTGGCACAGGAATTGTTAGAATTAAAGAGATAATAAGAA
TAAGAAGAAGAACAAGAAAAACTCAAAAAGATTGAAGAAGAAGAAATTAATGAAGATGAA
GAAGAAGACCTTTAAAATAGTGGTAAAAAATCTAAAGGTGTATCTGATAATTTAAATGGA
AATTAAAACATTGAAAAAATGTAGCTAGAGTGA


>TTHERM_01299730(gene)
ATGAATCGTCAGCCAAGGCGTAAAACAGAAAATAACTACAAAGATGTGATAGAGGAAGAA
ATAAACGATTTAGTAACTCATGAAGAAAATGTGTTAAATATAGCAGCTGGAAATAAATTA
AAATTGCAAAATAAAAATTCACGCAAAATTTCAAACGAAATAGATGATGACGAAGAAGAT
GAAGAAATAGATTTCATAGATTCGCAAGATGCAAGTAATGGAGCTGCTGAAAAGTTATAG
CGTGTTTATAGATAGCTATTAAAAAACGTAAAAATTTAGAGAATAGATAAAAAACCATTA
AATAAAATATTTAATCTACTTTTAAAGTAGAAAAATAAAAGCATTCAAATGTTAAAATAG
CATTTAAATGCATAAACATGACAGAATCAATAGACAAATAGTTGTTTTAAGAAATACATT
TTAATTTACTTTCTAAAATAAATAGAAAATTAAGGTAGACAATGTCTTCGATATTTAATG
GGATGAAAAAACTAAATTAGCAGATTTAGATTGGTAGAGCTCTGCTAATTTCTTAGATAC
TATTAGTAAAGTTTGGGGCATTAAGGTAGAAAAGACTCATAAAGATACCTATAGAATTTT
GGGAAACCTTATCCGTTCCGAGATCTAAGATCCGGAAGAAGAAGGTATAAATTTTTTTAG
TATTTAATAAGGAGCTAGCAAATAATATCTAACAAAGGGTAGAGTATATATTTTAGACAC
GTATTTTATTTTACCTTCCTACTCTACTTCTGTGTAAATATATGCCTATGTGATAATCTT
CATCTTTTCTTACTGCAGAATAAAATTTACTAAAGATATATTTAAATTTATTTTATGTAG
ATTAACTGATAAAAATAATTTGAAAAAGGGGTTAATATTTATGATATATTTTTATCAATA
AATTTGAAATGCTTTACTTACTTACTTACAAATAAATGACTTAAAACAAAGAAAGCTCTT
AAAAGAAGCATATTATGAGAATAAATATACATATTATCATTATTTATTTTTATTATCAAA
AAAGTTGATCCATCAAAAAAGATAAAAGAAAACTTAGATTTAGCAAAAATATTATCTAAA
GCTATTTAAAGACAAACCAATGACTAATATGGTGCCAAAACACTTGAAAAAAATCCTGAT
AATTTAGATGTTGTTACATACGACATAGAATTTGATGTTGATCCACTCTTTAAAAAAACT
TCTGCTAAATTTGACGAGTAGGGTGCAAGTGGATTACTTATAAATAACCTTTATATGGAT
TCAAATATGATGCTTATGCTTGAATCACATCAACCTAATGAGTAAAAGGCTGAAGAAGAG
GAGCGTAAAGAAATGTTAACATAAAAATCTTTACAATAAAACTTATCTCAAGAGTGCTCT
AATTATTGGAGAATTGTAGATACTAACAATCTCTTTTCTAGCAAATGCTCAATTGCAGAA
AGGTTATCAAATTTTAAAAAACTCCTTACATCTTCAGAAGATGAAAACACTTTAGTTAAA
TTGAATAATGAAGTAAATAGACATTCAAGATTAAAATGGTTAAATATTTTCTATTTAAAA
AGGTTACATAGATGAACAGTAAATTAAAGCAAAACTCTTAAAAAACAACAGCTTCTGAAT
AGAATATAAGTGCTTAACCTGTAATTGATGAAGTTAGAGTAGATATCTTGAATGATGATG
AATTATAAGCATTATATGATTAAGGAGTAGTTGATCCATTTGGCAAAGATGAGCTTTACG
GCTCTAATAGATAAGTACGATTTTATTTGTTAAGAAAAGTTTTTATTAATTTTTTATTAG
AAAACAAGCAGCTTAGCTGGTTTTATCGTAGATGACGATGATGATGATAGTAGTAAAAAA
TAAAGGTTAGGTGATAATGAATAAAAGAATAAGAAGGAAAGTGTTATAGAGGCTATTATT
GTAGAAGAAAGTGAGGAGGACGAAGAAAAATAAAAAGCAATAAATGGTGTAGAAGAAGCA
GAGGAGAGAAAAGATTAAGAAAAACCAAACAAAAAGGTGGATGAAGGAGAGGATGAAGAA
GACGAAGAAGAAAAAAAACTTAAATAATAAGAATAGGATGATGAAGATGACAAAAAAGTT
GTCTTATTCACTGAAGCTAAAGAAAAGTAAAGTGATGAAGAAGATGAAGATAAAGCCAAA
AGCGATGAAGAGGATTCCGTAGAAGAAATGGAAGAAGAGGAAGATGAAGAAGGTAATATA
GTTAAGAGAAGAAAAGTTAAGGGTCCCTTAGATTTTGCAGGAATCGACGAAAAACTTAAA
ACAGTAGGTAGAGGTATGCATAAGAAATTCAAGTAAAACTAATTAAAAATAAAACTTTAA
ATTGAGTAAATTTTAAATTGTTTTTTATTCTTTTAGTGAAGAATTTAATGAGTTACCTCA
GCCTAAAACTAACAAGAAGAAGAAGAAAAACAAAAAATCTGGTGATGATGAGGAAGAAAA
TAAAAAATATTTCGACTTTAATACTAAAATAGTAATTAAGAAACATAAAATTATTTTTTT
TCTTTATTATTTTTTTATGCTAATAAAACAAACAGACTGAAAAAGTGGATATCATTTTGG
CAAATAAAAAGAAAAGAACTATTAAAGATTATTTAAAAAGTGTTAAGTTTATATTCGAAG
ATAAAGATCATTTATTTTTGAGTGATAAAATTTTTATGAAAATGACAGAAGGTCTAACTA
ATCCATTTAATGTTAATGAAATGTACTTAGAAATGAAAAATAACAAAAACGAACCTGCAA
TTAATGAAAATATTTTACCAGAAATCAATATAGATGATAATGATGATTCTTTAGATATTA
ATAATAACTTCAGAAACTTATTTGCTTTAAATTATGGTAATGATGAAGAAGACGAAGAAA
AAGTATATTCTTTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTCAAATTCA
GACATTCATTAAATGTTTCTTAATTTTTTATTATAGTTCAAAGAGCAAAAGAATCATGTT
AAAATAAGAGATTTAAAGAGAAAACTTTGGGACAAATTAAGATCTAAAATTTTAGAAAAC
CATGCTAATTTCTAGAAGTAAAAACAAACAAGAAAGAAATAAGAAAAGGAAGAAATGGAA
TAAATTCAATTCACTAATATGATGACTGAATTACCAAGTATGTTCGGAGAAAGTGCTAAA
AGAGTATCAATGCAATCATGCTTTATCACAATCTTGCATTTAGCGAATGAATAAACATTA
AAATTAAGCAATTAAGAAGGAGAAGACTTTGGTATAACAAAAGAATCTAAAGCTGACTTG
GCACAGGAATTGTTAGAATTAAAGAGATAATAAGAATAAGAAGAAGAACAAGAAAAACTC
AAAAAGATTGAAGAAGAAGAAATTAATGAAGATGAAGAAGAAGACCTTTAAAATAGTGGT
AAAAAATCTAAAGGTGTATCTGATAATTTAAATGGAAATTAAAACATTGAAAAAATGTAG
CTAGAGTGA


>TTHERM_01299730(protein)
MNRQPRRKTENNYKDVIEEEINDLVTHEENVLNIAAGNKLKLQNKNSRKISNEIDDDEED
EEIDFIDSQDASNGAAEKLQRVYRQLLKNKIKVDNVFDIQWDEKTKLADLDWQSSANFLD
TISKVWGIKVEKTHKDTYRILGNLIRSEIQDPEEEVDPSKKIKENLDLAKILSKAIQRQT
NDQYGAKTLEKNPDNLDVVTYDIEFDVDPLFKKTSAKFDEQGASGLLINNLYMDSNMMLM
LESHQPNEQKAEEEERKEMLTQKSLQQNLSQECSNYWRIVDTNNLFSSKCSIAERLSNFK
KLLTSSEDENTLVKLNNEVTQMNSKLKQNSQKTTASEQNISAQPVIDEVRVDILNDDELQ
ALYDQGVVDPFGKDELYGSNRQKTSSLAGFIVDDDDDDSSKKQRLGDNEQKNKKESVIEA
IIVEESEEDEEKQKAINGVEEAEERKDQEKPNKKVDEGEDEEDEEEKKLKQQEQDDEDDK
KVVLFTEAKEKQSDEEDEDKAKSDEEDSVEEMEEEEDEEGNIVKRRKVKGPLDFAGIDEK
LKTVGRGMHKKFNEEFNELPQPKTNKKKKKNKKSGDDEEENKKYFDFNTKITEKVDIILA
NKKKRTIKDYLKSVKFIFEDKDHLFLSDKIFMKMTEGLTNPFNVNEMYLEMKNNKNEPAI
NENILPEINIDDNDDSLDINNNFRNLFALNYGNDEEDEEKFKEQKNHVKIRDLKRKLWDK
LRSKILENHANFQKQKQTRKKQEKEEMEQIQFTNMMTELPSMFGESAKRVSMQSCFITIL
HLANEQTLKLSNQEGEDFGITKESKADLAQELLELKRQQEQEEEQEKLKKIEEEEINEDE
EEDLQNSGKKSKGVSDNLNGNQNIEKMQLE